Solution of Levinthal's Paradox and a Physical Theory of Protein Folding Times

被引:26
作者
Ivankov, Dmitry N. [1 ]
Finkelstein, Alexei V. [2 ,3 ,4 ]
机构
[1] Skolkovo Inst Sci & Technol, Ctr Life Sci, Moscow 121205, Russia
[2] Russian Acad Sci, Inst Prot Res, Pushchino 142290, Moscow Region, Russia
[3] Lomonosov Moscow State Univ, Biol Dept, Moscow 119192, Russia
[4] Lomonosov Moscow State Univ, Biotechnol Dept, Pushchino 142290, Moscow Region, Russia
基金
俄罗斯科学基金会;
关键词
protein folding; Levinthal's paradox; all-or-none" transition; free energy barrier; folding funnel; detailed balance principle; AMINO-ACID-SEQUENCE; SECONDARY STRUCTURE-CONTENT; TOPOMER SEARCH MODEL; AGAIN; VIEWS; TRANSITION-STATE; CONTACT ORDER; FIREFLY LUCIFERASE; NEURAL-NETWORKS; RATES; PREDICTION;
D O I
10.3390/biom10020250
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
"How do proteins fold?" Researchers have been studying different aspects of this question for more than 50 years. The most conceptual aspect of the problem is how protein can find the global free energy minimum in a biologically reasonable time, without exhaustive enumeration of all possible conformations, the so-called "Levinthal's paradox." Less conceptual but still critical are aspects about factors defining folding times of particular proteins and about perspectives of machine learning for their prediction. We will discuss in this review the key ideas and discoveries leading to the current understanding of folding kinetics, including the solution of Levinthal's paradox, as well as the current state of the art in the prediction of protein folding times.
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页数:19
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