Bioinformatics Education-Perspectives and Challenges out of Africa

被引:58
作者
Bishop, Ozlem Tastan [1 ,2 ]
Adebiyi, Ezekiel F. [3 ,4 ,5 ]
Alzohairy, Ahmed M. [6 ]
Everett, Dean
Ghedira, Kais
Ghouila, Amel
Kumuthini, Judit [7 ]
Mulder, Nicola J. [8 ,9 ]
Panji, Sumir [10 ]
Patterton, Hugh-G.
机构
[1] Rhodes Univ, Res Unit Bioinformat RUBi, ZA-6140 Grahamstown, South Africa
[2] South African Soc Bioinformat, Oxford, England
[3] Covenant Univ Bioinformat Res CUBRe, San Francisco, CA USA
[4] CU NIH H3AbioNet Node, Abuja, Nigeria
[5] ASBCB, Tunis, Tunisia
[6] Zagazig Univ, Fac Agr, Mol Genet, Zagazig, Egypt
[7] GlaxoSmithKlien GSK, Drug Discovery Grp, Brentford, England
[8] Univ Cape Town, Computat Biol Grp, ZA-7700 Rondebosch, South Africa
[9] H3ABioNet, Johannesburg, South Africa
[10] H3ABioNet Consortium, Johannesburg, South Africa
基金
美国国家卫生研究院;
关键词
bioinformatics education; bioinformatics in Africa; postgraduate program;
D O I
10.1093/bib/bbu022
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The discipline of bioinformatics has developed rapidly since the complete sequencing of the first genomes in the 1990s. The development of many high-throughput techniques during the last decades has ensured that bioinformatics has grown into a discipline that overlaps with, and is required for, the modern practice of virtually every field in the life sciences. This has placed a scientific premium on the availability of skilled bioinformaticians, a qualification that is extremely scarce on the African continent. The reasons for this are numerous, although the absence of a skilled bioinformatician at academic institutions to initiate a training process and build sustained capacity seems to be a common African shortcoming. This dearth of bioinformatics expertise has had a knock-on effect on the establishment of many modern high-throughput projects at African institutes, including the comprehensive and systematic analysis of genomes from African populations, which are among the most genetically diverse anywhere on the planet. Recent funding initiatives from the National Institutes of Health and the Wellcome Trust are aimed at ameliorating this shortcoming. In this paper, we discuss the problems that have limited the establishment of the bioinformatics field in Africa, as well as propose specific actions that will help with the education and training of bioinformaticians on the continent. This is an absolute requirement in anticipation of a boom in high-throughput approaches to human health issues unique to data from African populations.
引用
收藏
页码:355 / 364
页数:10
相关论文
共 29 条
  • [1] Agarwal H., 2013, International Journal of Science and Research (IJSR), P146
  • [2] A curriculum for bioinformatics: The time is ripe
    Altman, RB
    [J]. BIOINFORMATICS, 1998, 14 (07) : 549 - 550
  • [3] Computer literacy and E-learning perception in Cameroon: the case of Yaounde Faculty of Medicine and Biomedical Sciences
    Bediang, Georges
    Stoll, Beat
    Geissbuhler, Antoine
    Klohn, Axel M.
    Stuckelberger, Astrid
    Nko'o, Samuel
    Chastonay, Philippe
    [J]. BMC MEDICAL EDUCATION, 2013, 13
  • [4] Counsell Damian, 2003, Briefings in Bioinformatics, V4, P7, DOI 10.1093/bib/4.1.7
  • [5] COMPUTER AIDS TO PROTEIN SEQUENCE DETERMINATION
    DAYHOFF, MO
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1965, 8 (01) : 97 - &
  • [6] Open software for biologists: from famine to feast
    Field, Dawn
    Tiwari, Bela
    Booth, Tim
    Houten, Stewart
    Swan, Dan
    Bertrand, Nicolas
    Thurston, Milo
    [J]. NATURE BIOTECHNOLOGY, 2006, 24 (07) : 801 - 803
  • [7] WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD
    FLEISCHMANN, RD
    ADAMS, MD
    WHITE, O
    CLAYTON, RA
    KIRKNESS, EF
    KERLAVAGE, AR
    BULT, CJ
    TOMB, JF
    DOUGHERTY, BA
    MERRICK, JM
    MCKENNEY, K
    SUTTON, G
    FITZHUGH, W
    FIELDS, C
    GOCAYNE, JD
    SCOTT, J
    SHIRLEY, R
    LIU, LI
    GLODEK, A
    KELLEY, JM
    WEIDMAN, JF
    PHILLIPS, CA
    SPRIGGS, T
    HEDBLOM, E
    COTTON, MD
    UTTERBACK, TR
    HANNA, MC
    NGUYEN, DT
    SAUDEK, DM
    BRANDON, RC
    FINE, LD
    FRITCHMAN, JL
    FUHRMANN, JL
    GEOGHAGEN, NSM
    GNEHM, CL
    MCDONALD, LA
    SMALL, KV
    FRASER, CM
    SMITH, HO
    VENTER, JC
    [J]. SCIENCE, 1995, 269 (5223) : 496 - 512
  • [8] E-learning in medical education in resource constrained low- and middle-income countries
    Frehywot, Seble
    Vovides, Yianna
    Talib, Zohray
    Mikhail, Nadia
    Ross, Heather
    Wohltjen, Hannah
    Bedada, Selam
    Korhumel, Kristine
    Koumare, Abdel Karim
    Scott, James
    [J]. HUMAN RESOURCES FOR HEALTH, 2013, 11
  • [9] Ten Simple Rules for Organizing a Virtual Conference-Anywhere
    Gichora, Nelson N.
    Fatumo, Segun A.
    Ngara, Mtakai V.
    Chelbat, Noura
    Ramdayal, Kavisha
    Opap, Kenneth B.
    Siwo, Geoffrey H.
    Adebiyi, Marion O.
    El Gonnouni, Amina
    Zofou, Denis
    Maurady, Amal A. M.
    Adebiyi, Ezekiel F.
    de Villiers, Etienne P.
    Masiga, Daniel K.
    Bizzaro, Jeffrey W.
    Suravajhala, Prashanth
    Ommeh, Sheila C.
    Hide, Winston
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2010, 6 (02)
  • [10] H3ABioNet, SUST PAN AF IN PRESS