Integrative Analyses and Verification of the Expression and Prognostic Significance for RCN1 in Glioblastoma Multiforme

被引:8
作者
Lu, Weicheng [1 ]
Chen, Hong [2 ]
Liang, Bo [3 ]
Ou, Chaopeng [1 ]
Zhang, Mingwei [4 ]
Yue, Qiuyuan [5 ,6 ]
Xie, Jingdun [1 ]
机构
[1] Sun Yat Sen Univ, Dept Anesthesiol, State Key Lab Oncol Southern China, Collaborat Innovat Canc Med,Canc Ctr, Guangzhou, Peoples R China
[2] Fujian Prov Hosp, Dept Gastrointestinal Surg, Fuzhou, Peoples R China
[3] Nanjing Univ Chinese Med, Nanjing, Peoples R China
[4] Fujian Med Univ, Dept Radiat Oncol, Affiliated Hosp 1, Fuzhou, Peoples R China
[5] Fujian Canc Hosp, Dept Radiol, Fuzhou, Peoples R China
[6] Fujian Med Univ, Canc Hosp, Fuzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
glioblastoma multiform; invasion; prognosis; nomogram; RCN1; CENTRAL-NERVOUS-SYSTEM; PREDICTION MODELS; CLASSIFICATION; RETICULOCALBIN; CURVES; MARKER; TEMOZOLOMIDE; MECHANISMS; BIOMARKERS; PATHOLOGY;
D O I
10.3389/fmolb.2021.736947
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glioblastoma multiform is a lethal primary brain tumor derived from astrocytic, with a poor prognosis in adults. Reticulocalbin-1 (RCN1) is a calcium-binding protein, dysregulation of which contributes to tumorigenesis and progression in various cancers. The present study aimed to identify the impact of RCN1 on the outcomes of patients with Glioblastoma multiforme (GBM). The study applied two public databases to require RNA sequencing data of Glioblastoma multiform samples with clinical data for the construction of a training set and a validation set, respectively. We used bioinformatic analyses to determine that RCN1 could be an independent factor for the overall survival of Glioblastoma multiform patients. In the training set, the study constructed a predictive prognostic model based on the combination of RCN1 with various clinical parameters for overall survival at 0.5-, 1.0-, and 1.5-years, as well as developed a nomogram, which was further validated by validation set. Pathways analyses indicated that RCN1 was involved in KEAS and MYC pathways and apoptosis. In vitro experiments indicated that RCN1 promoted cell invasion of Glioblastoma multiform cells. These results illustrated the prognostic role of RCN1 for overall survival in Glioblastoma multiform patients, indicated the promotion of RCN1 in cell invasion, and suggested the probability of RCN1 as a potential targeted molecule for treatment in Glioblastoma multiform.
引用
收藏
页数:16
相关论文
共 73 条
[1]   Glioblastoma: pathology, molecular mechanisms and markers [J].
Aldape, Kenneth ;
Zadeh, Gelareh ;
Mansouri, Sheila ;
Reifenberger, Guido ;
von Deimling, Andreas .
ACTA NEUROPATHOLOGICA, 2015, 129 (06) :829-848
[2]   Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study [J].
Ali, H. Raza ;
Chlon, Leon ;
Pharoah, Paul D. P. ;
Markowetz, Florian ;
Caldas, Carlos .
PLOS MEDICINE, 2016, 13 (12)
[3]   Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes [J].
Amatschek, S ;
Koenig, U ;
Auer, H ;
Steinlein, P ;
Pacher, M ;
Gruenfelder, A ;
Dekan, G ;
Vogl, S ;
Kubista, E ;
Heider, KH ;
Stratowa, C ;
Schreiber, M ;
Sommergruber, W .
CANCER RESEARCH, 2004, 64 (03) :844-856
[4]   The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans [J].
Ardlie, Kristin G. ;
DeLuca, David S. ;
Segre, Ayellet V. ;
Sullivan, Timothy J. ;
Young, Taylor R. ;
Gelfand, Ellen T. ;
Trowbridge, Casandra A. ;
Maller, Julian B. ;
Tukiainen, Taru ;
Lek, Monkol ;
Ward, Lucas D. ;
Kheradpour, Pouya ;
Iriarte, Benjamin ;
Meng, Yan ;
Palmer, Cameron D. ;
Esko, Tonu ;
Winckler, Wendy ;
Hirschhorn, Joel N. ;
Kellis, Manolis ;
MacArthur, Daniel G. ;
Getz, Gad ;
Shabalin, Andrey A. ;
Li, Gen ;
Zhou, Yi-Hui ;
Nobel, Andrew B. ;
Rusyn, Ivan ;
Wright, Fred A. ;
Lappalainen, Tuuli ;
Ferreira, Pedro G. ;
Ongen, Halit ;
Rivas, Manuel A. ;
Battle, Alexis ;
Mostafavi, Sara ;
Monlong, Jean ;
Sammeth, Michael ;
Mele, Marta ;
Reverter, Ferran ;
Goldmann, Jakob M. ;
Koller, Daphne ;
Guigo, Roderic ;
McCarthy, Mark I. ;
Dermitzakis, Emmanouil T. ;
Gamazon, Eric R. ;
Im, Hae Kyung ;
Konkashbaev, Anuar ;
Nicolae, Dan L. ;
Cox, Nancy J. ;
Flutre, Timothee ;
Wen, Xiaoquan ;
Stephens, Matthew .
SCIENCE, 2015, 348 (6235) :648-660
[5]   Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 [J].
Barbie, David A. ;
Tamayo, Pablo ;
Boehm, Jesse S. ;
Kim, So Young ;
Moody, Susan E. ;
Dunn, Ian F. ;
Schinzel, Anna C. ;
Sandy, Peter ;
Meylan, Etienne ;
Scholl, Claudia ;
Froehling, Stefan ;
Chan, Edmond M. ;
Sos, Martin L. ;
Michel, Kathrin ;
Mermel, Craig ;
Silver, Serena J. ;
Weir, Barbara A. ;
Reiling, Jan H. ;
Sheng, Qing ;
Gupta, Piyush B. ;
Wadlow, Raymond C. ;
Le, Hanh ;
Hoersch, Sebastian ;
Wittner, Ben S. ;
Ramaswamy, Sridhar ;
Livingston, David M. ;
Sabatini, David M. ;
Meyerson, Matthew ;
Thomas, Roman K. ;
Lander, Eric S. ;
Mesirov, Jill P. ;
Root, David E. ;
Gilliland, D. Gary ;
Jacks, Tyler ;
Hahn, William C. .
NATURE, 2009, 462 (7269) :108-U122
[6]   Circulating biomarkers in patients with glioblastoma [J].
Bark, Juliana Muller ;
Kulasinghe, Arutha ;
Chua, Benjamin ;
Day, Bryan W. ;
Punyadeera, Chamindie .
BRITISH JOURNAL OF CANCER, 2020, 122 (03) :295-305
[7]   Estimating and comparing time-dependent areas under receiver operating characteristic curves for censored event times with competing risks [J].
Blanche, Paul ;
Dartigues, Jean-Francois ;
Jacqmin-Gadda, Helene .
STATISTICS IN MEDICINE, 2013, 32 (30) :5381-5397
[8]   Understanding of interaction (subgroup) analysis in clinical trials [J].
Brankovic, Milos ;
Kardys, Isabella ;
Steyerberg, Ewout W. ;
Lemeshow, Stanley ;
Markovic, Maw ;
Rizopoulos, Dimitris ;
Boersma, Eric .
EUROPEAN JOURNAL OF CLINICAL INVESTIGATION, 2019, 49 (08)
[9]   Endoplasmic reticulum stress signals in the tumour and its microenvironment [J].
Chen, Xi ;
Cubillos-Ruiz, Juan R. .
NATURE REVIEWS CANCER, 2021, 21 (02) :71-88
[10]   Overexpression of RCN1 correlates with poor prognosis and progression in non-small cell lung cancer [J].
Chen, Xinming ;
Shao, Weiwei ;
Huang, Hua ;
Feng, Xiaochun ;
Yao, Sumei ;
Ke, Honggang .
HUMAN PATHOLOGY, 2019, 83 :140-148