Copy Number Variations of TBK1 in Australian Patients With Primary Open-Angle Glaucoma

被引:63
作者
Awadalla, Mona S. [1 ]
Fingert, John H. [2 ,3 ]
Roos, Benjamin E. [2 ,3 ]
Chen, Simon [4 ]
Holmes, Richard [5 ]
Graham, Stuart L. [6 ]
Chehade, Mark [7 ]
Galanopolous, Anna [7 ]
Ridge, Bronwyn [1 ]
Souzeau, Emmanuelle [1 ]
Zhou, Tiger [1 ]
Siggs, Owen M. [1 ]
Hewitt, Alex W. [8 ]
Mackey, David A. [8 ]
Burdon, Kathryn P. [1 ,9 ]
Craig, Jamie E. [1 ]
机构
[1] Flinders Univ S Australia, Flinders Med Ctr, Dept Ophthalmol, Adelaide, SA 5001, Australia
[2] Univ Iowa, Carver Coll Med, Dept Ophthalmol & Visual Sci, Iowa City, IA USA
[3] Univ Iowa, Carver Coll Med, Stephen Wynn Inst Vis Res, Iowa City, IA USA
[4] Vis Eye Inst, Vitreoretinal Unit, Sydney, NSW, Australia
[5] Palmerston N Hosp, Palmerston North, New Zealand
[6] Macquarie Univ, Australian Sch Adv Med, Sydney, NSW 2109, Australia
[7] Royal Adelaide Hosp, South Australian Inst Ophthalmol, Adelaide, SA 5000, Australia
[8] Lions Eye Inst, Perth, WA, Australia
[9] Univ Tasmania, Menzies Res Inst Tasmania, Hobart, Tas, Australia
基金
英国医学研究理事会;
关键词
NORMAL-TENSION GLAUCOMA; OPTINEURIN; ASSOCIATION; GENE; SUSCEPTIBILITY; DUPLICATION; PREVALENCE; MUTATIONS; AUTOPHAGY;
D O I
10.1016/j.ajo.2014.09.044
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
center dot PURPOSE: To investigate the presence of TBK1 copy number variations in a large, well-characterized Australian cohort of patients with glaucoma comprising both normal-tension glaucoma and high-tension glaucoma cases. center dot DESIGN: A retrospective cohort study. center dot METHODS: DNA samples from patients with normal-tension glaucoma and high-tension glaucoma and unaffected controls were screened for TBK1 copy number variations using real-time quantitative polymerase chain reaction. Samples with additional copies of the TBK1 gene were further tested using custom comparative genomic hybridization arrays. center dot RESULTS: Four out of 334 normal-tension glaucoma cases (1.2%) were found to carry TBK1 copy number variations using quantitative polymerase chain reaction. One extra dose of the TBK1 gene (duplication) was detected in 3 normal-tension glaucoma patients, while 2 extra doses of the gene (triplication) were detected in a fourth normal-tension glaucoma patient. The results were further confirmed by custom comparative genomic hybridization arrays. Further, the TBK1 copy number variation segregated with normal-tension glaucoma in the family members of the probands, showing an autosomal dominant pattern of inheritance. No TBK1 copy number variations were detected in 1045 Australian patients with high-tension glaucoma or in 254 unaffected controls. center dot CONCLUSION: We report the presence of TBK1 copy number variations in our Australian normal-tension glaucoma cohort, including the first example of more than 1 extra copy of this gene in glaucoma patients (gene triplication). These results confirm TBK1 to be an important cause of normal-tension glaucoma, but do not suggest common involvement in high-tension glaucoma. (C) 2015 by Elsevier Inc. All rights reserved.
引用
收藏
页码:124 / 130
页数:7
相关论文
共 32 条
[1]  
Abu-Amero KK, 2012, MOL VIS, V18, P1421
[2]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[3]   Evaluation of optineurin sequence variations in 1,048 patients with open-angle glaucoma [J].
Alward, WLM ;
Kwon, YH ;
Kawase, K ;
Craig, JE ;
Hayreh, SS ;
Johnson, AT ;
Khanna, CL ;
Yamamoto, T ;
Mackey, DA ;
Roos, BR ;
Affatigato, LM ;
Sheffield, VC ;
Stone, EM .
AMERICAN JOURNAL OF OPHTHALMOLOGY, 2003, 136 (05) :904-910
[4]   Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering [J].
Browning, Sharon R. ;
Browning, Brian L. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2007, 81 (05) :1084-1097
[5]   Genome-wide association study identifies susceptibility loci for open angle glaucoma at TMCO1 and CDKN2B-AS1 [J].
Burdon, Kathryn P. ;
Macgregor, Stuart ;
Hewitt, Alex W. ;
Sharma, Shiwani ;
Chidlow, Glyn ;
Mills, Richard A. ;
Danoy, Patrick ;
Casson, Robert ;
Viswanathan, Ananth C. ;
Liu, Jimmy Z. ;
Landers, John ;
Henders, Anjali K. ;
Wood, John ;
Souzeau, Emmanuelle ;
Crawford, April ;
Leo, Paul ;
Wang, Jie Jin ;
Rochtchina, Elena ;
Nyholt, Dale R. ;
Martin, Nicholas G. ;
Montgomery, Grant W. ;
Mitchell, Paul ;
Brown, Matthew A. ;
Mackey, David A. ;
Craig, Jamie E. .
NATURE GENETICS, 2011, 43 (06) :574-U110
[6]   Overexpression of optineurin E50K disrupts Rab8 interaction and leads to a progressive retinal degeneration in mice [J].
Chi, Zai-Long ;
Akahori, Masakazu ;
Obazawa, Minoru ;
Minami, Masayoshi ;
Noda, Toru ;
Nakaya, Naoki ;
Tomarev, Stanislav ;
Kawase, Kazuhide ;
Yamamoto, Tetsuya ;
Noda, Setsuko ;
Sasaoka, Masaki ;
Shimazaki, Atsushi ;
Takada, Yuichiro ;
Iwata, Takeshi .
HUMAN MOLECULAR GENETICS, 2010, 19 (13) :2606-2615
[7]   Genetic Investigation into the Endophenotypic Status of Central Corneal Thickness and Optic Disc Parameters in Relation to Open-Angle Glaucoma [J].
Dimasi, David P. ;
Burdon, Kathryn P. ;
Hewitt, Alex W. ;
Fitzgerald, Jude ;
Wang, Jie Jin ;
Healey, Paul R. ;
Mitchell, Paul ;
Mackey, David A. ;
Craig, Jamie E. .
AMERICAN JOURNAL OF OPHTHALMOLOGY, 2012, 154 (05) :833-842
[8]   Primary open-angle glaucoma genes [J].
Fingert, J. H. .
EYE, 2011, 25 (05) :587-595
[9]   TBK1 and Flanking Genes in Human Retina [J].
Fingert, John H. ;
Darbro, Benjamin W. ;
Qian, Qining ;
Van Rheeden, Richard ;
Miller, Kathy ;
Riker, Megan ;
Solivan-Timpe, Frances ;
Roos, Ben R. ;
Robin, Alan L. ;
Mullins, Robert F. .
OPHTHALMIC GENETICS, 2014, 35 (01) :35-40
[10]   Copy number variations on chromosome 12q14 in patients with normal tension glaucoma [J].
Fingert, John H. ;
Robin, Alan L. ;
Stone, Jennifer L. ;
Roos, Ben R. ;
Davis, Lea K. ;
Scheetz, Todd E. ;
Bennett, Steve R. ;
Wassink, Thomas H. ;
Kwon, Young H. ;
Alward, Wallace L. M. ;
Mullins, Robert F. ;
Sheffield, Val C. ;
Stone, Edwin M. .
HUMAN MOLECULAR GENETICS, 2011, 20 (12) :2482-2494