A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment

被引:31
作者
Song, Binyu [1 ]
Wu, Pingfan [2 ]
Liang, Zhen [1 ]
Wang, Jianzhang [1 ]
Zheng, Yu [3 ]
Wang, Yuanyong [4 ]
Chi, Hao [5 ]
Li, Zichao [1 ]
Song, Yajuan [1 ]
Yin, Xisheng [5 ]
Yu, Zhou [1 ]
Song, Baoqiang [1 ]
机构
[1] Fourth Mil Med Univ, Xijing Hosp, Dept Plast Surg, Xian, Peoples R China
[2] Soochow Univ, Dept Burn & Plast Surg, Affiliated Hosp 1, Suzhou, Peoples R China
[3] Chinese Acad Med Sci & Peking Union Med Coll, Hosp Skin Dis, Inst Dermatol, Nanjing, Peoples R China
[4] Air Force Mil Med Univ, Dept Thorac Surg, Tangdu Hosp, Xian, Peoples R China
[5] Southwest Med Univ, Clin Med Coll, Luzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
necroptosis; prognostic signature; SKCM; TCGA; TME; IMMUNE CELLS; EXPRESSION; CANCER; SURVIVAL; KINASE;
D O I
10.3389/fgene.2022.917007
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Necroptosis has been identified recently as a newly recognized programmed cell death that has an impact on tumor progression and prognosis, although the necroptosis-related gene (NRGs) potential prognostic value in skin cutaneous melanoma (SKCM) has not been identified. The aim of this study was to construct a prognostic model of SKCM through NRGs in order to help SKCM patients obtain precise clinical treatment strategies.Methods: RNA sequencing data collected from The Cancer Genome Atlas (TCGA) were used to identify differentially expressed and prognostic NRGs in SKCM. Depending on 10 NRGs via the univariate Cox regression analysis usage and LASSO algorithm, the prognostic risk model had been built. It was further validated by the Gene Expression Omnibus (GEO) database. The prognostic model performance had been assessed using receiver operating characteristic (ROC) curves. We evaluated the predictive power of the prognostic model for tumor microenvironment (TME) and immunotherapy response.Results: We constructed a prognostic model based on 10 NRGs (FASLG, TLR3, ZBP1, TNFRSF1B, USP22, PLK1, GATA3, EGFR, TARDBP, and TNFRSF21) and classified patients into two high- and low-risk groups based on risk scores. The risk score was considered a predictive factor in the two risk groups regarding the Cox regression analysis. A predictive nomogram had been built for providing a more beneficial prognostic indicator for the clinic. Functional enrichment analysis showed significant enrichment of immune-related signaling pathways, a higher degree of immune cell infiltration in the low-risk group than in the high-risk group, a negative correlation between risk scores and most immune checkpoint inhibitors (ICIs), anticancer immunity steps, and a more sensitive response to immunotherapy in the low-risk group.Conclusions: This risk score signature could be applied to assess the prognosis and classify low- and high-risk SKCM patients and help make the immunotherapeutic strategy decision.
引用
收藏
页数:14
相关论文
共 52 条
[1]   xCell: digitally portraying the tissue cellular heterogeneity landscape [J].
Aran, Dvir ;
Hu, Zicheng ;
Butte, Atul J. .
GENOME BIOLOGY, 2017, 18
[2]   Tumor Microenvironment [J].
Arneth, Borros .
MEDICINA-LITHUANIA, 2020, 56 (01)
[3]   Metabolic Plasticity of Melanoma Cells and Their Crosstalk With Tumor Microenvironment [J].
Avagliano, Angelica ;
Fiume, Giuseppe ;
Pelagalli, Alessandra ;
Sanita, Gennaro ;
Ruocco, Maria Rosaria ;
Montagnani, Stefania ;
Arcucci, Alessandro .
FRONTIERS IN ONCOLOGY, 2020, 10
[4]   Final Version of 2009 AJCC Melanoma Staging and Classification [J].
Balch, Charles M. ;
Gershenwald, Jeffrey E. ;
Soong, Seng-jaw ;
Thompson, John F. ;
Atkins, Michael B. ;
Byrd, David R. ;
Buzaid, Antonio C. ;
Cochran, Alistair J. ;
Coit, Daniel G. ;
Ding, Shouluan ;
Eggermont, Alexander M. ;
Flaherty, Keith T. ;
Gimotty, Phyllis A. ;
Kirkwood, John M. ;
McMasters, Kelly M. ;
Mihm, Martin C., Jr. ;
Morton, Donald L. ;
Ross, Merrick I. ;
Sober, Arthur J. ;
Sondak, Vernon K. .
JOURNAL OF CLINICAL ONCOLOGY, 2009, 27 (36) :6199-6206
[5]   RIPK1-RIPK3-MLKL-Associated Necroptosis Drives Leishmania infantum Killing in Neutrophils [J].
Barbosa, Laiana A. ;
Fiuza, Paloma P. ;
Borges, Leticia J. ;
Rolim, Fellipe A. ;
Andrade, Mayara B. ;
Luz, Nivea F. ;
Quintela-Carvalho, Graziele ;
Lima, Jonilson B. ;
Almeida, Roque P. ;
Chan, Francis K. ;
Bozza, Marcelo T. ;
Borges, Valeria M. ;
Prates, Deboraci B. .
FRONTIERS IN IMMUNOLOGY, 2018, 9
[6]   Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression [J].
Becht, Etienne ;
Giraldo, Nicolas A. ;
Lacroix, Laetitia ;
Buttard, Benedicte ;
Elarouci, Nabila ;
Petitprez, Florent ;
Selves, Janick ;
Laurent-Puig, Pierre ;
Sautes-Fridman, Catherine ;
Fridman, Wolf H. ;
de Reynies, Aurelien .
GENOME BIOLOGY, 2016, 17
[7]   Necroptosis, pyroptosis and apoptosis: an intricate game of cell death [J].
Bertheloot, Damien ;
Latz, Eicke ;
Franklin, Bernardo S. .
CELLULAR & MOLECULAR IMMUNOLOGY, 2021, 18 (05) :1106-1121
[8]  
Carlino MS, 2021, LANCET, V398, P1002, DOI 10.1016/S0140-6736(21)01206-X
[9]   Promising New Tools for Targeting p53 Mutant Cancers: Humoral and Cell-Based Immunotherapies [J].
Chasov, Vitaly ;
Zaripov, Mikhail ;
Mirgayazova, Regina ;
Khadiullina, Raniya ;
Zmievskaya, Ekaterina ;
Ganeeva, Irina ;
Valiullina, Aigul ;
Rizvanov, Albert ;
Bulatov, Emil .
FRONTIERS IN IMMUNOLOGY, 2021, 12
[10]  
Chen BB, 2018, METHODS MOL BIOL, V1711, P243, DOI 10.1007/978-1-4939-7493-1_12