Protein crystal structure solution by fast incorporation of negatively and positively charged anomalous scatterers

被引:62
作者
Nagem, RAP
Dauter, Z
Polikarpov, I
机构
[1] Lab Nacl Luz Sincrotron, BR-13084971 Campinas, SP, Brazil
[2] Univ Estadual Campinas, Dept Fis, BR-13084971 Campinas, SP, Brazil
[3] NCI, Synchrotron Radiat Res Sect, Upton, NY 11973 USA
[4] Brookhaven Natl Lab, Upton, NY 11973 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2001年 / 57卷
关键词
D O I
10.1107/S0907444901007260
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The preparation of derivatives by the traditional methods of soaking is one of the most time-consuming steps in protein crystal structure solution by X-ray diffraction techniques. The `quick cryosoaking' procedure for derivatization with halides (monovalent anions) offers the possibility of significantly speeding up this process [Dauter et al. (2000), Acta Cryst. D56, 232-237]. In the present work, an extension of this technique is proposed and the use of two different classes of compounds (monovalent and polyvalent cations) that can be successfully utilized in the quick cryosoaking procedure for the derivatization and phasing of protein crystals is described. This approach has been tested on hen egg-white lysozyme and has been successfully used to solve the structure of a novel trypsin inhibitor. The possibility of using cations in the fast cryosoaking procedure gives additional flexibility in the process of derivatization and increases the chances of success in phase determination. This method can be applied to high-throughput crystallographic projects.
引用
收藏
页码:996 / 1002
页数:7
相关论文
共 25 条
[1]   Methods used in the structure determination of bovine mitochondrial F-1 ATPase [J].
Abrahams, JP ;
Leslie, AGW .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :30-42
[2]   Difference structure-factor normalization for heavy-atom or anomalous-scattering substructure determinations [J].
Blessing, RH ;
Smith, GD .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1999, 32 :664-670
[3]  
Bragg W. L., 1954, P ROY SOC LOND A MAT, V225, P315
[4]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[5]   CALCULATION OF ANOMALOUS SCATTERING FACTORS AT ARBITRARY WAVELENGTHS [J].
CROMER, DT .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1983, 16 (AUG) :437-437
[6]   Novel approach to phasing proteins: derivatization by short cryo-soaking with halides [J].
Dauter, Z ;
Dauter, M ;
Rajashankar, KR .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :232-237
[7]   ON THE APPLICATION OF PHASE-RELATIONSHIPS TO COMPLEX STRUCTURES .22. TECHNIQUES FOR RANDOM PHASE REFINEMENT [J].
DEBAERDEMAEKER, T ;
WOOLFSON, MM .
ACTA CRYSTALLOGRAPHICA SECTION A, 1983, 39 (MAR) :193-196
[8]   Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods [J].
delaFortelle, E ;
Bricogne, G .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :472-494
[9]   STRUCTURE SOLUTION BY MINIMAL-FUNCTION PHASE REFINEMENT AND FOURIER FILTERING .1. THEORETICAL BASIS [J].
DETITTA, GT ;
WEEKS, CM ;
THUMAN, P ;
MILLER, R ;
HAUPTMAN, HA .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1994, 50 :203-210
[10]   An extensively modified version of MolScript that includes greatly enhanced coloring capabilities [J].
Esnouf, RM .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1997, 15 (02) :132-+