One-step synthesis of picolinohydrazides from fusaric acid: DFT, structural characterization and molecular inhibitory studies on metastatic tumor-derived exosomal and non-exosomal proteins

被引:11
作者
Anand, Krishnan [1 ,2 ]
Ramesh, Muthusamy [3 ]
Singh, Thishana [4 ]
Balakumar, Chandrasekaran [5 ]
Chithravel, Vadivalagan [6 ]
Prasher, Parteek [7 ]
Katari, Naresh Kumar [8 ]
Gupta, Gaurav [9 ]
Singh, Sachin Kumar [10 ]
Chellappan, Dinesh Kumar [11 ]
Dua, Kamal [12 ,13 ]
Chavda, Vivek [14 ]
Laishevtcev, Alexey [15 ,16 ]
Shahbaaz, Mohd [17 ]
Abdellattif, Magda H. [18 ]
Saravanan, Muthupandian [19 ]
Chuturgoon, Anil A. [20 ]
机构
[1] Univ Free State, Fac Hlth Sci, Sch Pathol, Dept Chem Pathol, ZA-9300 Bloemfontein, South Africa
[2] Natl Hlth Lab Serv, Sch Pathol, Dept Chem Pathol, Bloemfontein, South Africa
[3] Omega Coll Pharm, Dept Pharmaceut Anal, Hyderabad 501301, India
[4] Univ Kwazulu Natal, Fac Agr Engn & Sci, Sch Chem & Phys, Westville Campus, Durban, South Africa
[5] ITM Univ, Sch Pharm, Dept Pharmaceut Chem, Gwalior 474001, Madhya Pradesh, India
[6] AKFA Univ, Sch Med, Dept Biochem, Mol Cell Physiol Lab, Tashkent, Uzbekistan
[7] Univ Petr & Energy Studies, Dept Chem, Dehra Dun 248007, Uttar Pradesh, India
[8] GITAM Deemed Univ, Dept Chem, Hyderabad 502329, India
[9] Suresh GyanVihar Univ, Sch Pharm, Jagatpura Mahal Rd, Jaipur 302017, Rajasthan, India
[10] Lovely Profess Univ, Sch Pharmaceut Sci, Phagwara 144411, Punjab, India
[11] Int Med Univ, Sch Pharm, Kuala Lumpur 57000, Malaysia
[12] Univ Technol Sydney, Grad Sch Hlth, Discipline Pharm, Ultimo, NSW 2007, Australia
[13] Univ Technol Sydney, Fac Hlth, Australian Res Ctr Complementary & Integrat Med, Sydney, NSW 2007, Australia
[14] LM Coll Pharm, Dept Pharmaceut, Ahmadabad, Gujarat, India
[15] Russian Acad Sci, All Russian Sci Res Inst Expt Vet Med, Fed Res Ctr, Moscow, Russia
[16] Orel State Univ, Lab Biocontrol & Antimicrobial Resistance, Oryol, Russia
[17] Univ Western Cape, South African Natl Bioinformat Inst, South African Med Res Council, Bioinformat Unit, Private Bag X17, ZA-7535 Cape Town, South Africa
[18] Taif Univ, Coll Sci, Dept Chem, Deanship Sci Res, POB 11099, Taif 21944, Saudi Arabia
[19] Saveetha Inst Med & Tech Sci SIMATS, Saveetha Dent Coll, Dept Pharmacol, AMR & Nanomed Lab, Chennai 600077, Tamil Nadu, India
[20] Univ KwaZulu Natal, Sch Lab Med & Med Sci, Discipline Med Biochem, Durban, South Africa
基金
新加坡国家研究基金会;
关键词
Exosomes; DFT; Molecular docking; Molecular dynamics simulation; EGFR; HSP90; DYNAMICS SIMULATION; BREAST-CANCER; THERAPY; SYSTEM; HSP90;
D O I
10.1016/j.molstruc.2022.132442
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A new class of picolinohydrazide analogs (5-7) was synthesized via the one-pot reaction between fusaric acid (1) and aryl hydrazines (2-4) using amide coupling reagents. The synthesized compounds (5-7) were characterized using density-functional theory (DFT) computational spectroscopy, and instrumental methods. Global and local reactivity descriptors of these compounds were calculated at the B3LYP/6311++g(d) level of theory to predict the reactivity and the reactive sites. The evaluated electronic properties (HOMO and LUMO) gave an insight into the molecular properties of the molecule. The charge distribution and molecular electrostatic potential facilitated the prediction of either the electrophilic or nucleophilic reactivity of these compounds. Extracellular heat shock protein-90 (HSP90) plays an essential role in tumor invasion while epidermal growth factor receptor (EGFR) is found at high levels on the surface of metastatic tumors. Blocking EGFR and HSP90 may predict metastatic spread. Molecular docking and molecular dynamics showed that picolinohydrazide analogs (5-7) act as inhibitors to the active-site cavity of the target proteins, i.e., EGFR and HSP90. The fluorine scaffold (6) has a potential binding free energy of -31.01 kcal mol(-1) and -30.54 kcal mol(-1) for EGFR and HSP90, respectively. The binding complex of fluorine scaffold (6) with EGFR and HSP90, respectively has also shown substantial stability in the post-dynamics analysis. Our results implicate the potential efficacy of novel adjunct therapeutic insights in treating advanced cancer. (C) 2022 Elsevier B.V. All rights reserved.
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页数:16
相关论文
共 44 条
[1]  
[Anonymous], 2014, AMBER 14
[2]   Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences [J].
Balaj, Leonora ;
Lessard, Ryan ;
Dai, Lixin ;
Cho, Yoon-Jae ;
Pomeroy, Scott L. ;
Breakefield, Xandra O. ;
Skog, Johan .
NATURE COMMUNICATIONS, 2011, 2
[3]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[4]   Combining Hit Identification Strategies: Fragment-Based and in Silico Approaches to Orally Active 2-Aminothieno[2,3-d]pyrimidine Inhibitors of the Hsp90 Molecular Chaperone [J].
Brough, Paul A. ;
Barril, Xavier ;
Borgognoni, Jenifer ;
Chene, Patrick ;
Davies, Nicholas G. M. ;
Davis, Ben ;
Drysdale, Martin J. ;
Dymock, Brian ;
Eccles, Suzanne A. ;
Garcia-Echeverria, Carlos ;
Fromont, Christophe ;
Hayes, Angela ;
Hubbard, Roderick E. ;
Jordan, Allan M. ;
Jensen, Michael Rugaard ;
Massey, Andrew ;
Merrett, Angela ;
Padfield, Antony ;
Parsons, Rachel ;
Radimerski, Thomas ;
Raynaud, Florence I. ;
Robertson, Alan ;
Roughley, Stephen D. ;
Schoepfer, Joseph ;
Simmonite, Heather ;
Sharp, Swee Y. ;
Surgenor, Allan ;
Valenti, Melanie ;
Walls, Steven ;
Webb, Paul ;
Wood, Mike ;
Workman, Paul ;
Wright, Lisa .
JOURNAL OF MEDICINAL CHEMISTRY, 2009, 52 (15) :4794-4809
[5]   ISOLATION AND CHARACTERIZATION OF 2 NEW FUSARIC ACID ANALOGS FROM FUSARIUM-MONILIFORME NRRL-13,163 [J].
BURMEISTER, HR ;
GROVE, MD ;
PETERSON, RE ;
WEISLEDER, D ;
PLATTNER, RD .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1985, 50 (02) :311-314
[6]  
Chavda VP, 2019, MICRO NANO TECHNOL, P1, DOI 10.1016/B978-0-12-814029-1.00001-6
[7]   SYSTEMIC AND RENAL HEMODYNAMIC EFFECTS OF BUPICOMIDE - NEW VASODILATOR [J].
CHRYSANT, SG ;
ADAMOPOULOS, P ;
TSUCHIYA, M ;
FROHLICH, ED .
AMERICAN HEART JOURNAL, 1976, 92 (03) :335-339
[8]   Fusaric Acid immunotoxicity and MAPK activation in normal peripheral blood mononuclear cells and Thp-1 cells [J].
Dhani, Shanel ;
Nagiah, Savania ;
Naidoo, Dhaneshree B. ;
Chuturgoon, Anil A. .
SCIENTIFIC REPORTS, 2017, 7
[9]  
Elaasser M.M., 2013, AFRICAN J BIOL SCI, V9, P143
[10]   Functional proteomic screens reveal an essential extracellular role for hsp90α in cancer cell invasiveness [J].
Eustace, BK ;
Sakurai, T ;
Stewart, JK ;
Yimlamai, D ;
Unger, C ;
Zehetmeier, C ;
Lain, B ;
Torella, C ;
Henning, SW ;
Beste, G ;
Scroggins, BT ;
Neckers, L ;
Ilag, LL ;
Jay, DG .
NATURE CELL BIOLOGY, 2004, 6 (06) :507-514