Antibiotics, birth mode, and diet shape microbiome maturation during early life

被引:1003
作者
Bokulich, Nicholas A. [1 ]
Chung, Jennifer [1 ]
Battaglia, Thomas [1 ]
Henderson, Nora [1 ]
Jay, Melanie [1 ,2 ]
Li, Huilin [3 ,4 ]
Lieber, Arnon D. [1 ]
Wu, Fen [1 ,2 ]
Perez-Perez, Guillermo I. [1 ,5 ]
Chen, Yu [1 ,2 ]
Schweizer, William [6 ]
Zheng, Xuhui [5 ]
Contreras, Monica [1 ]
Dominguez-Bello, Maria Gloria [1 ]
Blaser, Martin J. [1 ,5 ,7 ]
机构
[1] NYU, Dept Med, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USA
[2] NYU, Dept Populat Hlth, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USA
[3] NYU, Dept Populat Hlth, Div Biostat, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USA
[4] NYU, Dept Environm Med, Langone Med Ctr, 550 1St Ave, New York, NY 10016 USA
[5] NYU, Dept Microbiol, Langone Med Ctr, New York, NY 10016 USA
[6] NYU, Dept Obstet & Gynecol, Langone Med Ctr, New York, NY 10016 USA
[7] New York Harbor Dept Vet Affairs Med Ctr, New York, NY 10010 USA
关键词
INFANT GUT MICROBIOME; CESAREAN-SECTION; HUMAN-MILK; RISK; DIVERSITY; BACTERIAL; DELIVERY; IMPACT; METAANALYSIS; RESILIENCE;
D O I
10.1126/scitranslmed.aad7121
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Early childhood is a critical stage for the foundation and development of both the microbiome and host. Early-life antibiotic exposures, cesarean section, and formula feeding could disruptmicrobiome establishment and adversely affect health later in life. We profiled microbial development during the first 2 years of life in a cohort of 43 U.S. infants and identified multiple disturbances associated with antibiotic exposures, cesarean section, and formula feeding. These exposures contributed to altered establishment of maternal bacteria, delayed microbiome development, and altered a-diversity. These findings illustrate the complexity of early-life microbiome development and its sensitivity to perturbation.
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页数:13
相关论文
共 65 条
[1]   Low gut microbiota diversity in early infancy precedes asthma at school age [J].
Abrahamsson, T. R. ;
Jakobsson, H. E. ;
Andersson, A. F. ;
Bjorksten, B. ;
Engstrand, L. ;
Jenmalm, M. C. .
CLINICAL AND EXPERIMENTAL ALLERGY, 2014, 44 (06) :842-850
[2]   Sphingolipids from a Symbiotic Microbe Regulate Homeostasis of Host Intestinal Natural Killer T Cells [J].
An, Dingding ;
Oh, Sungwhan F. ;
Olszak, Torsten ;
Neves, Joana F. ;
Avci, Fikri Y. ;
Erturk-Hasdemir, Deniz ;
Lu, Xi ;
Zeissig, Sebastian ;
Blumberg, Richard S. ;
Kasper, Dennis L. .
CELL, 2014, 156 (1-2) :123-133
[3]  
Anderson MJ, 2001, AUSTRAL ECOL, V26, P32, DOI 10.1111/j.1442-9993.2001.01070.pp.x
[4]  
[Anonymous], 2004, Applied Longitudinal Analysis
[5]  
Aronesty E., 2013, Open Bioinforma J, V7, P1, DOI DOI 10.2174/1875036201307010001
[6]   Early infancy microbial and metabolic alterations affect risk of childhood asthma [J].
Arrieta, Marie-Claire ;
Stiemsma, Leah T. ;
Dimitriu, Pedro A. ;
Thorson, Lisa ;
Russell, Shannon ;
Yurist-Doutsch, Sophie ;
Kuzeljevic, Boris ;
Gold, Matthew J. ;
Britton, Heidi M. ;
Lefebvre, Diana L. ;
Subbarao, Padmaja ;
Mandhane, Piush ;
Becker, Allan ;
McNagny, Kelly M. ;
Sears, Malcolm R. ;
Kollmann, Tobias ;
Mohn, William W. ;
Turvey, Stuart E. ;
Finlay, B. Brett .
SCIENCE TRANSLATIONAL MEDICINE, 2015, 7 (307)
[7]   Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota [J].
Atarashi, Koji ;
Tanoue, Takeshi ;
Oshima, Kenshiro ;
Suda, Wataru ;
Nagano, Yuji ;
Nishikawa, Hiroyoshi ;
Fukuda, Shinji ;
Saito, Takuro ;
Narushima, Seiko ;
Hase, Koji ;
Kim, Sangwan ;
Fritz, Joelle V. ;
Wilmes, Paul ;
Ueha, Satoshi ;
Matsushima, Kouji ;
Ohno, Hiroshi ;
Olle, Bernat ;
Sakaguchi, Shimon ;
Taniguchi, Tadatsugu ;
Morita, Hidetoshi ;
Hattori, Masahira ;
Honda, Kenya .
NATURE, 2013, 500 (7461) :232-+
[8]   Impact of maternal intrapartum antibiotics, method of birth and breastfeeding on gut microbiota during the first year of life: a prospective cohort study [J].
Azad, M. B. ;
Konya, T. ;
Persaud, R. R. ;
Guttman, D. S. ;
Chari, R. S. ;
Field, C. J. ;
Sears, M. R. ;
Mandhane, P. J. ;
Turvey, S. E. ;
Subbarao, P. ;
Becker, A. B. ;
Scott, J. A. ;
Kozyrskyj, A. L. .
BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY, 2016, 123 (06) :983-993
[9]   Infant antibiotic exposure and the development of childhood overweight and central adiposity [J].
Azad, M. B. ;
Bridgman, S. L. ;
Becker, A. B. ;
Kozyrskyj, A. L. .
INTERNATIONAL JOURNAL OF OBESITY, 2014, 38 (10) :1290-1298
[10]   Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months [J].
Azad, Meghan B. ;
Konya, Theodore ;
Maughan, Heather ;
Guttman, David S. ;
Field, Catherine J. ;
Chari, Radha S. ;
Sears, Malcolm R. ;
Becker, Allan B. ;
Scott, James A. ;
Kozyrskyj, Anita L. .
CANADIAN MEDICAL ASSOCIATION JOURNAL, 2013, 185 (05) :385-394