Crystal structure of the eukaryotic origin recognition complex

被引:101
作者
Bleichert, Franziska [1 ]
Botchan, Michael R. [2 ]
Berger, James M. [1 ]
机构
[1] Johns Hopkins Sch Med, Dept Biophys & Biophys Chem, Baltimore, MD 21205 USA
[2] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
基金
美国国家卫生研究院;
关键词
DNA-REPLICATION; CONFORMATIONAL-CHANGES; ORC6; PROTEIN; ATP-HYDROLYSIS; BINDING; SEQUENCE; DOMAIN; CLAMP; INITIATORS; HOMOLOGY;
D O I
10.1038/nature14239
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Initiation of cellular DNA replication is tightly controlled to sustain genomic integrity. In eukaryotes, the heterohexameric origin recognition complex (ORC) is essential for coordinating replication onset. Here we describe the crystal structure of Drosophila ORC at 3.5 angstrom resolution, showing that the 270 kiloclalton initiator core complex comprises a two-layered notched ring in which a collar of winged-helix domains from the Orcl-5 subunits sits atop a layer of AAA+ (ATPases associated with a variety of cellular activities) folds. Although canonical inter-AAA+ domain interactions exist between four of the six ORC subunits, unanticipated features are also evident. These include highly interdigitated domain-swapping interactions between the winged-helix folds and AAA+ modules of neighbouring protomers, and a quasi-spiral arrange. ment of DNA binding elements that circumnavigate an approximately 20 A wide channel in the centre of the complex. Comparative analyses indicate that ORC encircles DNA, using its winged-helix domain face to engage the mini-chromosome maintenance 2-7 (MCM2-7) complex during replicative helicase loading; however, an observed out-of-plane rotation of more than 900 for the Orc1 AAA+ domain disrupts interactions with catalytic amino acids in Orc4, narrowing and sealing off entry into the central channel. Prima facie, our data indicate that Drosophila ORC can switch between active and autoinhibited conformations, suggesting a novel means for cell cycle and/or developmental control of ORC functions.
引用
收藏
页码:321 / +
页数:20
相关论文
共 68 条
[1]   PHENIX: a comprehensive Python']Python-based system for macromolecular structure solution [J].
Adams, Paul D. ;
Afonine, Pavel V. ;
Bunkoczi, Gabor ;
Chen, Vincent B. ;
Davis, Ian W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Hung, Li-Wei ;
Kapral, Gary J. ;
Grosse-Kunstleve, Ralf W. ;
McCoy, Airlie J. ;
Moriarty, Nigel W. ;
Oeffner, Robert ;
Read, Randy J. ;
Richardson, David C. ;
Richardson, Jane S. ;
Terwilliger, Thomas C. ;
Zwart, Peter H. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :213-221
[2]   ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids [J].
Ashkenazy, Haim ;
Erez, Elana ;
Martz, Eric ;
Pupko, Tal ;
Ben-Tal, Nir .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W529-W533
[3]   Role of the Orc6 protein in origin recognition complex-dependent DNA binding and replication in Drosophila melanogaster [J].
Balasov, Maxim ;
Huijbregts, Richard P. H. ;
Chesnokov, Igor .
MOLECULAR AND CELLULAR BIOLOGY, 2007, 27 (08) :3143-3153
[4]   ATP-DEPENDENT RECOGNITION OF EUKARYOTIC ORIGINS OF DNA-REPLICATION BY A MULTIPROTEIN COMPLEX [J].
BELL, SP ;
STILLMAN, B .
NATURE, 1992, 357 (6374) :128-134
[5]   Helicase Loading at Chromosomal Origins of Replication [J].
Bell, Stephen P. ;
Kaguni, Jon M. .
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2013, 5 (06)
[6]   A Meier-Gorlin syndrome mutation in a conserved C-terminal helix of Orc6 impedes origin recognition complex formation [J].
Bleichert, Franziska ;
Balasov, Maxim ;
Chesnokov, Igor ;
Nogales, Eva ;
Botchan, Michael R. ;
Berger, James M. .
ELIFE, 2013, 2
[7]   ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication [J].
Bowers, JL ;
Randell, JCW ;
Chen, SY ;
Bell, SP .
MOLECULAR CELL, 2004, 16 (06) :967-978
[8]   Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex [J].
Bowman, GD ;
O'Donnell, M ;
Kuriyan, J .
NATURE, 2004, 429 (6993) :724-730
[9]   Generation, representation and flow of phase information in structure determination:: recent developments in and around SHARP 2.0 [J].
Bricogne, G ;
Vonrhein, C ;
Flensburg, C ;
Schiltz, M ;
Paciorek, W .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2003, 59 :2023-2030
[10]   MolProbity: all-atom structure validation for macromolecular crystallography [J].
Chen, Vincent B. ;
Arendall, W. Bryan, III ;
Headd, Jeffrey J. ;
Keedy, Daniel A. ;
Immormino, Robert M. ;
Kapral, Gary J. ;
Murray, Laura W. ;
Richardson, Jane S. ;
Richardson, David C. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2010, 66 :12-21