Individual increase in inbreeding allows estimating effective sizes from pedigrees

被引:156
作者
Gutierrez, Juan Pablo [1 ]
Cervantes, Isabel [1 ]
Molina, Antonio [2 ]
Valera, Mercedes [3 ]
Goyache, Felix [4 ]
机构
[1] Fac Vet, Dept Anim Prod, Madrid 28040, Spain
[2] Univ Cordoba, Dept Genet, E-14071 Cordoba, Spain
[3] Univ Seville, Dept Ciencias Agroforestales, EUITA, Seville 41013, Spain
[4] SERIDA Somio, Gijon 33203, Asturias, Spain
关键词
effective size; increase in inbreeding; overlapped generation; genetic contribution;
D O I
10.1051/gse:2008008
中图分类号
S8 [畜牧、 动物医学、狩猎、蚕、蜂];
学科分类号
0905 ;
摘要
We present here a simple approach to obtain reliable estimates of the effective population size in real world populations via the computation of the increase in inbreeding for each individual (delta F-i) in a given population. The values of delta Fi are computed as t-root of 1 - (1 - F-i) where F-i is the inbreeding coefficient and t is the equivalent complete generations for each individual. The values of delta F computed for a pre-defined reference subset can be averaged and used to estimate effective size. A standard error of this estimate of N-e can be further computed from the standard deviation of the individual increase in inbreeding. The methodology is demonstrated by applying it to several simulated examples and to a real pedigree in which other methodologies fail when considering reference subpopulations. The main characteristics of the approach and its possible use are discussed both for predictive purposes and for analyzing genealogies.
引用
收藏
页码:359 / 378
页数:20
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