Epidemiological data from the COVID-19 outbreak, real-time case information

被引:223
作者
Xu, Bo [1 ,2 ]
Gutierrez, Bernardo [2 ,10 ]
Mekaru, Sumiko [3 ,4 ]
Sewalk, Kara [3 ]
Goodwin, Lauren [3 ]
Loskill, Alyssa [3 ,11 ]
Cohn, Emily L. [3 ]
Hswen, Yulin [3 ]
Hill, Sarah C. [2 ]
Cobo, Maria M. [10 ,12 ]
Zarebski, Alexander E. [2 ]
Li, Sabrina [2 ,13 ]
Wu, Chieh-Hsi [5 ]
Hulland, Erin [6 ,14 ]
Morgan, Julia D. [6 ,10 ,14 ]
Wang, Lin [7 ,15 ]
O'Brien, Katelynn [3 ]
Scarpino, Samuel V. [8 ]
Brownstein, John S. [3 ,9 ]
Pybus, Oliver G. [2 ]
Pigott, David M. [6 ,14 ]
Kraemer, Moritz U. G. [2 ,3 ,9 ]
机构
[1] Tsinghua Univ, Dept Earth Syst Sci, Minist Educ, Key Lab Earth Syst Modeling, Beijing, Peoples R China
[2] Univ Oxford, Dept Zool, Oxford, England
[3] Boston Childrens Hosp, Computat Epidemiol Lab, Boston, MA USA
[4] Booz Allen Hamilton, Westborough, MA USA
[5] Univ Southampton, Math Sci, Southampton, Hants, England
[6] Univ Washington, Dept Hlth Metr Sci, Seattle, WA 98195 USA
[7] Inst Pasteur, CNRS, UMR2000, Math Modelling Infect Dis Unit, Paris, France
[8] Northeastern Univ, Network Sci Inst, Boston, MA 02115 USA
[9] Harvard Med Sch, Dept Pediat, Boston, MA 02115 USA
[10] USFQ, Sch Biol & Environm Sci, Quito, Ecuador
[11] Boston Univ, Sch Publ Hlth, Boston, MA 02215 USA
[12] Univ Oxford, Dept Paediat, Oxford, England
[13] Univ Oxford, Sch Geog & Environm, Oxford, England
[14] Univ Washington, Inst Hlth Metr & Evaluat, Seattle, WA 98195 USA
[15] Univ Cambridge, Dept Genet, Cambridge, England
基金
比尔及梅琳达.盖茨基金会;
关键词
D O I
10.1038/s41597-020-0448-0
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cases of a novel coronavirus were first reported in Wuhan, Hubei province, China, in December 2019 and have since spread across the world. Epidemiological studies have indicated human-to-human transmission in China and elsewhere. To aid the analysis and tracking of the COVID-19 epidemic we collected and curated individual-level data from national, provincial, and municipal health reports, as well as additional information from online reports. All data are geo-coded and, where available, include symptoms, key dates (date of onset, admission, and confirmation), and travel history. The generation of detailed, real-time, and robust data for emerging disease outbreaks is important and can help to generate robust evidence that will support and inform public health decision making.
引用
收藏
页数:6
相关论文
共 16 条
[1]   Pneumonia of unknown aetiology in Wuhan, China: potential for international spread via commercial air travel [J].
Bogoch, Isaac I. ;
Watts, Alexander ;
Thomas-Bachli, Andrea ;
Huber, Carmen ;
Kraemer, Moritz U. G. ;
Khan, Kamran .
JOURNAL OF TRAVEL MEDICINE, 2020, 27 (02)
[2]   Nonmechanistic forecasts of seasonal influenza with iterative one-week-ahead distributions [J].
Brooks, Logan C. ;
Farrow, David C. ;
Hyun, Sangwon ;
Tibshirani, Ryan J. ;
Rosenfeld, Roni .
PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (06)
[3]  
Brownstein JS, 2009, NEW ENGL J MED, V360, P2153, DOI 10.1056/NEJMp0904012
[4]  
Chen N., 2020, LANCET, V395, P507, DOI [DOI 10.1016/S0140-6736(20)30211-7, 10.1016/S0140-6736(20)30211-7]
[5]   An interactive web-based dashboard to track COVID-19 in real time [J].
Dong, Ensheng ;
Du, Hongru ;
Gardner, Lauren .
LANCET INFECTIOUS DISEASES, 2020, 20 (05) :533-534
[6]   Pandemic Potential of a Strain of Influenza A (H1N1): Early Findings [J].
Fraser, Christophe ;
Donnelly, Christl A. ;
Cauchemez, Simon ;
Hanage, William P. ;
Van Kerkhove, Maria D. ;
Hollingsworth, T. Deirdre ;
Griffin, Jamie ;
Baggaley, Rebecca F. ;
Jenkins, Helen E. ;
Lyons, Emily J. ;
Jombart, Thibaut ;
Hinsley, Wes R. ;
Grassly, Nicholas C. ;
Balloux, Francois ;
Ghani, Azra C. ;
Ferguson, Neil M. ;
Rambaut, Andrew ;
Pybus, Oliver G. ;
Lopez-Gatell, Hugo ;
Alpuche-Aranda, Celia M. ;
Bojorquez Chapela, Ietza ;
Palacios Zavala, Ethel ;
Espejo Guevara, Dulce Ma. ;
Checchi, Francesco ;
Garcia, Erika ;
Hugonnet, Stephane ;
Roth, Cathy .
SCIENCE, 2009, 324 (5934) :1557-1561
[7]   The global compendium of Aedes aegypti and Ae. albopictus occurrence [J].
Kraemer, Moritz U. G. ;
Sinka, Marianne E. ;
Duda, Kirsten A. ;
Mylne, Adrian ;
Shearer, Freya M. ;
Brady, Oliver J. ;
Messina, Jane P. ;
Barker, Christopher M. ;
Moore, Chester G. ;
Carvalho, Roberta G. ;
Coelho, Giovanini E. ;
Van Bortel, Wim ;
Hendrickx, Guy ;
Schaffner, Francis ;
Wint, G. R. William ;
Elyazar, Iqbal R. F. ;
Teng, Hwa-Jen ;
Hay, Simon I. .
SCIENTIFIC DATA, 2015, 2
[8]   Early Transmission Dynamics in Wuhan, China, of Novel Coronavirus-Infected Pneumonia [J].
Li, Qun ;
Guan, Xuhua ;
Wu, Peng ;
Wang, Xiaoye ;
Zhou, Lei ;
Tong, Yeqing ;
Ren, Ruiqi ;
Leung, Kathy S. M. ;
Lau, Eric H. Y. ;
Wong, Jessica Y. ;
Xing, Xuesen ;
Xiang, Nijuan ;
Wu, Yang ;
Li, Chao ;
Chen, Qi ;
Li, Dan ;
Liu, Tian ;
Zhao, Jing ;
Liu, Man ;
Tu, Wenxiao ;
Chen, Chuding ;
Jin, Lianmei ;
Yang, Rui ;
Wang, Qi ;
Zhou, Suhua ;
Wang, Rui ;
Liu, Hui ;
Luo, Yinbo ;
Liu, Yuan ;
Shao, Ge ;
Li, Huan ;
Tao, Zhongfa ;
Yang, Yang ;
Deng, Zhiqiang ;
Liu, Boxi ;
Ma, Zhitao ;
Zhang, Yanping ;
Shi, Guoqing ;
Lam, Tommy T. Y. ;
Wu, Joseph T. ;
Gao, George F. ;
Cowling, Benjamin J. ;
Yang, Bo ;
Leung, Gabriel M. ;
Feng, Zijian .
NEW ENGLAND JOURNAL OF MEDICINE, 2020, 382 (13) :1199-1207
[9]   Collaborative efforts to forecast seasonal influenza in the United States, 2015-2016 [J].
McGowan, Craig J. ;
Biggerstaff, Matthew ;
Johansson, Michael ;
Apfeldorf, Karyn M. ;
Ben-Nun, Michal ;
Brooks, Logan ;
Convertino, Matteo ;
Erraguntla, Madhav ;
Farrow, David C. ;
Freeze, John ;
Ghosh, Saurav ;
Hyun, Sangwon ;
Kandula, Sasikiran ;
Lega, Joceline ;
Liu, Yang ;
Michaud, Nicholas ;
Morita, Haruka ;
Niemi, Jarad ;
Ramakrishnan, Naren ;
Ray, Evan L. ;
Reich, Nicholas G. ;
Riley, Pete ;
Shaman, Jeffrey ;
Tibshirani, Ryan ;
Vespignani, Alessandro ;
Zhang, Qian ;
Reed, Carrie ;
Rosenfeld, Roni ;
Ulloa, Nehemias ;
Will, Katie ;
Turtle, James ;
Bacon, David ;
Riley, Steven ;
Yang, Wan .
SCIENTIFIC REPORTS, 2019, 9 (1)
[10]   Retrospective forecasting of the 2010-2014 Melbourne influenza seasons using multiple surveillance systems [J].
Moss, R. ;
Zarebski, A. ;
Dawson, P. ;
McCaw, J. M. .
EPIDEMIOLOGY AND INFECTION, 2017, 145 (01) :156-169