On to the next chapter for crop breeding: Convergence with data science

被引:22
作者
Ersoz, Elhan S. [1 ,2 ]
Martin, Nicolas F. [2 ]
Stapleton, Ann E. [3 ]
机构
[1] Umbrella Genet, 60 Hazelwood Rd, Champaign, IL 61820 USA
[2] Univ Illinois, Dept Crop Sci, Urbana, IL 61820 USA
[3] Univ N Carolina, Dept Biol & Marine Biol, 601 S Coll Rd, Wilmington, NC 28401 USA
关键词
FISH SPECIES RICHNESS; COMPLEX TRAITS; PREDICTION; SELECTION; MAIZE; CLASSIFICATION; EFFICIENCY; GENOTYPE; MODEL; INHERITANCE;
D O I
10.1002/csc2.20054
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Crop breeding is as ancient as the invention of cultivation. In essence, the objective of crop breeding is to improve plant fitness under human cultivation conditions, making crops more productive while maintaining consistency in life cycle and quality. Predictive breeding has been demonstrated in the agricultural industry and in public breeding programs for over a decade. The massive stores of data that have been generated by industry, farmers, and scholars through several decades have finally been recognized as a potential asset that can be brought to bear on specific breeding decisions. A wide range of analytical methods that were initially developed for various other quantitative disciplines, such as machine learning, deep learning, and artificial intelligence, are now being adapted for application in crop breeding to support analytics and decision making processes. This convergence between data science and crop breeding analytics is expected to address long-standing gaps in crop breeding analytics, and realize the potential of applying advanced analytics to multidimensional data such as geospatial variables, a multitude of phenotypic responses, and genetic information. Here, we summarize the few existing examples followed by perspectives on where else these technologies would have applications to accelerate operational aspects of crop breeding and agricultural product development efforts.
引用
收藏
页码:639 / 655
页数:17
相关论文
共 98 条
[1]   Multi-objective optimized genomic breeding strategies for sustainable food improvement [J].
Akdemir, Deniz ;
Beavis, William ;
Fritsche-Neto, Roberto ;
Singh, Asheesh K. ;
Isidro-Sanchez, Julio .
HEREDITY, 2019, 122 (05) :672-683
[2]   Multilayer Networks in a Nutshell [J].
Aleta, Alberto ;
Moreno, Yamir .
ANNUAL REVIEW OF CONDENSED MATTER PHYSICS, VOL 10, 2019, 10 (01) :45-62
[3]   Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression [J].
Allier, Antoine ;
Moreau, Laurence ;
Charcosset, Alain ;
Teyssedre, Simon ;
Lehermeier, Christina .
G3-GENES GENOMES GENETICS, 2019, 9 (05) :1469-1479
[4]  
[Anonymous], SILICO PLANTS, DOI DOI 10.1093/INSILICOPLANTS/DIZ003
[5]   Community analysis in social networks [J].
Arenas, A ;
Danon, L ;
Díaz-Guilera, A ;
Gleiser, PM ;
Guimerà, R .
EUROPEAN PHYSICAL JOURNAL B, 2004, 38 (02) :373-380
[6]   Rapid breeding and varietal replacement are critical to adaptation of cropping systems in the developing world to climate change [J].
Atlin, Gary N. ;
Cairns, Jill E. ;
Das, Biswanath .
GLOBAL FOOD SECURITY-AGRICULTURE POLICY ECONOMICS AND ENVIRONMENT, 2017, 12 :31-37
[7]  
Batista L., 2018, PLANT BREEDERS SHOUL, DOI [10.1101/500652, DOI 10.1101/500652]
[8]   An empirical comparison of voting classification algorithms: Bagging, boosting, and variants [J].
Bauer, E ;
Kohavi, R .
MACHINE LEARNING, 1999, 36 (1-2) :105-139
[9]  
Bianconi Ginestra., 2018, Multilayer networks: structure and function, VFirst, P402
[10]   Sixty-two years of fighting hunger: personal recollections [J].
Borlaug, Norman E. .
EUPHYTICA, 2007, 157 (03) :287-297