Target Discovery for Precision Medicine Using High-Throughput Genome Engineering

被引:7
作者
Guo, Xinyi [1 ,2 ]
Chitale, Poonam [1 ,2 ]
Sanjana, Neville E. [1 ,2 ]
机构
[1] New York Genome Ctr, 101 Ave Amer, New York, NY 10013 USA
[2] NYU, Dept Biol, New York, NY 10003 USA
来源
PRECISION MEDICINE, CRISPR, AND GENOME ENGINEERING: MOVING FROM ASSOCIATION TO BIOLOGY AND THERAPEUTICS | 2017年 / 1016卷
关键词
Genome engineering; Pooled CRISPR screens; Functional genomics; Cancer; Drug resistance; Infectious disease; Metabolism; Target identification; WIDE CRISPR SCREEN; TRANSCRIPTIONAL ACTIVATION; REGULATORY ELEMENTS; DNA METHYLATION; GENETIC SCREENS; HOST FACTORS; HUMAN-CELLS; WEST-NILE; SYSTEM; CAS9;
D O I
10.1007/978-3-319-63904-8_7
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Over the past few years, programmable RNA-guided nucleases such as the CRISPR/Cas9 system have ushered in a new era of precision genome editing in diverse model systems and in human cells. Functional screens using large libraries of RNA guides can interrogate a large hypothesis space to pinpoint particular genes and genetic elements involved in fundamental biological processes and diseaserelevant phenotypes. Here, we review recent high-throughput CRISPR screens (e.g. loss-of--function, gain-of-function, and targeting noncoding elements) and highlight their potential for uncovering novel therapeutic targets, such as those involved in cancer resistance to small molecular drugs and immunotherapies, tumor evolution, infectious disease, inborn genetic disorders, and other therapeutic challenges.
引用
收藏
页码:123 / 145
页数:23
相关论文
共 100 条
[1]   C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector [J].
Abudayyeh, Omar O. ;
Gootenberg, Jonathan S. ;
Konermann, Silvana ;
Joung, Julia ;
Slaymaker, Ian M. ;
Cox, David B. T. ;
Shmakov, Sergey ;
Makarova, Kira S. ;
Semenova, Ekaterina ;
Minakhin, Leonid ;
Severinov, Konstantin ;
Regev, Aviv ;
Lander, Eric S. ;
Koonin, Eugene V. ;
Zhang, Feng .
SCIENCE, 2016, 353 (6299)
[2]   A Multiplexed Single-Cell CRISPR Screening Platform Enables Systematic Dissection of the Unfolded Protein Response [J].
Adamson, Britt ;
Norman, Thomas M. ;
Jost, Marco ;
Cho, Min Y. ;
Nunez, James K. ;
Chen, Yuwen ;
Villalta, Jacqueline E. ;
Gilbert, Luke A. ;
Horlbeck, Max A. ;
Hein, Marco Y. ;
Pak, Ryan A. ;
Gray, Andrew N. ;
Gross, Carol A. ;
Dixit, Atray ;
Parnas, Oren ;
Regev, Aviv ;
Weissman, Jonathan S. .
CELL, 2016, 167 (07) :1867-+
[3]   Genomic Copy Number Dictates a Gene-Independent Cell Response to CRISPR/Cas9 Targeting [J].
Aguirre, Andrew J. ;
Meyers, Robin M. ;
Weir, Barbara A. ;
Vazquez, Francisca ;
Zhang, Cheng-Zhong ;
Ben-David, Uri ;
Cook, April ;
Ha, Gavin ;
Harrington, William F. ;
Doshi, Mihir B. ;
Kost-Alimova, Maria ;
Gill, Stanley ;
Xu, Han ;
Ali, Levi D. ;
Jiang, Guozhi ;
Pantel, Sasha ;
Lee, Yenarae ;
Goodale, Amy ;
Cherniack, Andrew D. ;
Oh, Coyin ;
Kryukov, Gregory ;
Cowley, Glenn S. ;
Garraway, Levi A. ;
Stegmaier, Kimberly ;
Roberts, Charles W. ;
Golub, Todd R. ;
Meyerson, Matthew ;
Root, David E. ;
Tsherniak, Aviad ;
Hahn, William C. .
CANCER DISCOVERY, 2016, 6 (08) :914-929
[4]   A Genome-wide CRISPR Death Screen Identifies Genes Essential for Oxidative Phosphorylation [J].
Arroyo, Jason D. ;
Jourdain, Alexis A. ;
Calvo, Sarah E. ;
Ballarano, Carmine A. ;
Doench, John G. ;
Root, David E. ;
Mootha, Vamsi K. .
Cell Metabolism, 2016, 24 (06) :875-885
[5]   Bromodomain Inhibitors Correct Bioenergetic Deficiency Caused by Mitochondrial Disease Complex I Mutations [J].
Barrow, Joeva J. ;
Balsa, Eduardo ;
Verdeguer, Francisco ;
Tavares, Clint D. J. ;
Soustek, Meghan S. ;
Hollingsworth, Louis R. ;
Jedrychowski, Mark ;
Vogel, Rutger ;
Paulo, Joao A. ;
Smeitink, Jan ;
Gygi, Steve P. ;
Doench, John ;
Root, David E. ;
Puigserver, Pere .
MOLECULAR CELL, 2016, 64 (01) :163-175
[6]   CRISPR/Cas9 Screens Reveal Requirements for Host Cell Sulfation and Fucosylation in Bacterial Type III Secretion System-Mediated Cytotoxicity [J].
Blondel, Carlos J. ;
Park, Joseph S. ;
Hubbard, Troy P. ;
Pacheco, Alline R. ;
Kuehl, Carole J. ;
Walsh, Michael J. ;
Davis, Brigid M. ;
Gewurz, Benjamin E. ;
Doench, John G. ;
Waldor, Matthew K. .
CELL HOST & MICROBE, 2016, 20 (02) :226-237
[7]   Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci [J].
Canver, Matthew C. ;
Lessard, Samuel ;
Pinello, Luca ;
Wu, Yuxuan ;
Ilboudo, Yann ;
Stern, Emily N. ;
Needleman, Austen J. ;
Galacteros, Frederic ;
Brugnara, Carlo ;
Kutlar, Abdullah ;
McKenzie, Colin ;
Reid, Marvin ;
Chen, Diane D. ;
Das, Partha Pratim ;
Cole, Mitchel A. ;
Zeng, Jing ;
Kurita, Ryo ;
Nakamura, Yukio ;
Yuan, Guo-Cheng ;
Lettre, Guillaume ;
Bauer, Daniel E. ;
Orkin, Stuart H. .
NATURE GENETICS, 2017, 49 (04) :625-+
[8]   BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis [J].
Canver, Matthew C. ;
Smith, Elenoe C. ;
Sher, Falak ;
Pinello, Luca ;
Sanjana, Neville E. ;
Shalem, Ophir ;
Chen, Diane D. ;
Schupp, Patrick G. ;
Vinjamur, Divya S. ;
Garcia, Sara P. ;
Luc, Sidinh ;
Kurita, Ryo ;
Nakamura, Yukio ;
Fujiwara, Yuko ;
Maeda, Takahiro ;
Yuan, Guo-Cheng ;
Zhang, Feng ;
Orkin, Stuart H. ;
Bauer, Daniel E. .
NATURE, 2015, 527 (7577) :192-+
[9]   Characterization of Genomic Deletion Efficiency Mediated by Clustered Regularly Interspaced Palindromic Repeats (CRISPR)/Cas9 Nuclease System in Mammalian Cells [J].
Canver, Matthew C. ;
Bauer, Daniel E. ;
Dass, Abhishek ;
Yien, Yvette Y. ;
Chung, Jacky ;
Masuda, Takeshi ;
Maeda, Takahiro ;
Paw, Barry H. ;
Orkin, Stuart H. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2014, 289 (31) :21312-21324
[10]  
Chavez A, 2016, NAT METHODS, V13, P563, DOI [10.1038/NMETH.3871, 10.1038/nmeth.3871]