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Study on the Interactions Between Na+ and N-Methylacetamide and Water by the ABEEM/MM
被引:1
|作者:
Pan Yiming
[1
]
Zhang Jing
[1
]
Tian Bo
[1
]
Yao Jingjing
[1
]
Gong Lidong
[1
]
Liu Cui
[1
]
Yang Zhongzhi
[1
]
机构:
[1] Liaoning Normal Univ, Sch Chem & Chem Engn, Dalian 116029, Peoples R China
来源:
基金:
中国国家自然科学基金;
关键词:
Atom-bond electronegativity equalization method fused into molecular mechanics (ABEEM/MM);
Sodium ion;
N-Methylacetamide;
Polarizable force field;
FORCE-FIELD;
SIGMA-PI;
IONS;
PARAMETERS;
PROTEINS;
SIMULATIONS;
DYNAMICS;
BINDING;
ALKALI;
CHARGE;
D O I:
10.7503/cjcu20180546
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
The geometries, binding energies of [Na(H2O)(n)](+) (n = 3-8), [Na(NMA)(n)](+) (n = 3-8), [Na(NMA)(n)(H2O)(m)](+) (n+m = 4,6)(NMA = N-methylacetamide) were studied with the quantum chemical MP2/6-311++G(d, p)//B3LYP/6-31+G(d, p) level of theory and atom-bond electronegativity equalization method fused into molecular mechanics(ABEEM/MM) fluctuating charge force field. Based on the quantum chemical results, the polarizable ABEEM/MM potential energy functions of the above system were constructed, and the relative parameters were optimized and determined. The results show that the structures, binding energies, charge distributions obtained by ABEEM/MM are in good agreement with those from quantum chemical method(QM). The average absolute deviations(AAD) of distances of Na+-ligand, angles, and binding energies are less than 0.007 nm, 2.4 degrees, 8.9 kJ/mol, respectively. The relative root mean square deviations(RRMSD) of distances of Na+-ligand, angles, and binding energies are less than 3.5%, 2.0%, 12.4%, respectively. The linear correlation coefficients of the charge distributions from ABEEM/MM and QM are above 0.97.
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页码:2468 / 2476
页数:9
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