Study on the Interactions Between Na+ and N-Methylacetamide and Water by the ABEEM/MM

被引:1
|
作者
Pan Yiming [1 ]
Zhang Jing [1 ]
Tian Bo [1 ]
Yao Jingjing [1 ]
Gong Lidong [1 ]
Liu Cui [1 ]
Yang Zhongzhi [1 ]
机构
[1] Liaoning Normal Univ, Sch Chem & Chem Engn, Dalian 116029, Peoples R China
来源
基金
中国国家自然科学基金;
关键词
Atom-bond electronegativity equalization method fused into molecular mechanics (ABEEM/MM); Sodium ion; N-Methylacetamide; Polarizable force field; FORCE-FIELD; SIGMA-PI; IONS; PARAMETERS; PROTEINS; SIMULATIONS; DYNAMICS; BINDING; ALKALI; CHARGE;
D O I
10.7503/cjcu20180546
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The geometries, binding energies of [Na(H2O)(n)](+) (n = 3-8), [Na(NMA)(n)](+) (n = 3-8), [Na(NMA)(n)(H2O)(m)](+) (n+m = 4,6)(NMA = N-methylacetamide) were studied with the quantum chemical MP2/6-311++G(d, p)//B3LYP/6-31+G(d, p) level of theory and atom-bond electronegativity equalization method fused into molecular mechanics(ABEEM/MM) fluctuating charge force field. Based on the quantum chemical results, the polarizable ABEEM/MM potential energy functions of the above system were constructed, and the relative parameters were optimized and determined. The results show that the structures, binding energies, charge distributions obtained by ABEEM/MM are in good agreement with those from quantum chemical method(QM). The average absolute deviations(AAD) of distances of Na+-ligand, angles, and binding energies are less than 0.007 nm, 2.4 degrees, 8.9 kJ/mol, respectively. The relative root mean square deviations(RRMSD) of distances of Na+-ligand, angles, and binding energies are less than 3.5%, 2.0%, 12.4%, respectively. The linear correlation coefficients of the charge distributions from ABEEM/MM and QM are above 0.97.
引用
收藏
页码:2468 / 2476
页数:9
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