Recognizing nucleotides by cross-tunneling currents for DNA sequencing

被引:14
作者
Bagci, V. M. K. [1 ]
Kaun, Chao-Cheng [1 ,2 ]
机构
[1] Acad Sinica, Res Ctr Appl Sci, Taipei 11529, Taiwan
[2] Natl Tsing Hua Univ, Dept Phys, Hsinchu 30013, Taiwan
来源
PHYSICAL REVIEW E | 2011年 / 84卷 / 01期
关键词
MOLECULE;
D O I
10.1103/PhysRevE.84.011917
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Using first-principles calculations, we study electron transport through nucleotides inside a rectangular nanogap formed by two pairs of gold electrodes which are perpendicular and parallel to the nucleobase plane. We propose that this setup will enhance the nucleotide selectivity of tunneling signals to a great extent. Information from three electrical probing processes offers full nucleotide recognition, which survives the noise from neighboring nucleotides and configuration fluctuations.
引用
收藏
页数:4
相关论文
共 33 条
[1]   Density-functional method for nonequilibrium electron transport -: art. no. 165401 [J].
Brandbyge, M ;
Mozos, JL ;
Ordejón, P ;
Taylor, J ;
Stokbro, K .
PHYSICAL REVIEW B, 2002, 65 (16) :1654011-16540117
[2]   The potential and challenges of nanopore sequencing [J].
Branton, Daniel ;
Deamer, David W. ;
Marziali, Andre ;
Bayley, Hagan ;
Benner, Steven A. ;
Butler, Thomas ;
Di Ventra, Massimiliano ;
Garaj, Slaven ;
Hibbs, Andrew ;
Huang, Xiaohua ;
Jovanovich, Stevan B. ;
Krstic, Predrag S. ;
Lindsay, Stuart ;
Ling, Xinsheng Sean ;
Mastrangelo, Carlos H. ;
Meller, Amit ;
Oliver, John S. ;
Pershin, Yuriy V. ;
Ramsey, J. Michael ;
Riehn, Robert ;
Soni, Gautam V. ;
Tabard-Cossa, Vincent ;
Wanunu, Meni ;
Wiggin, Matthew ;
Schloss, Jeffery A. .
NATURE BIOTECHNOLOGY, 2008, 26 (10) :1146-1153
[3]   Electronic Signatures of all Four DNA Nucleosides in a Tunneling Gap [J].
Chang, Shuai ;
Huang, Shuo ;
He, Jin ;
Liang, Feng ;
Zhang, Peiming ;
Li, Shengqing ;
Chen, Xiang ;
Sankey, Otto ;
Lindsay, Stuart .
NANO LETTERS, 2010, 10 (03) :1070-1075
[4]  
Datta S., 1997, ELECT TRANSPORT MESO
[5]   Functionalized nanopore-embedded electrodes for rapid DNA sequencing [J].
He, Haiying ;
Scheicher, Ralph H. ;
Pandey, Ravindra ;
Rocha, Alexandre Reily ;
Sanvito, Stefano ;
Grigoriev, Anton ;
Ahuja, Rajeev ;
Karna, Shashi P. .
JOURNAL OF PHYSICAL CHEMISTRY C, 2008, 112 (10) :3456-3459
[6]  
Huang S, 2010, NAT NANOTECHNOL, V5, P868, DOI [10.1038/nnano.2010.213, 10.1038/NNANO.2010.213]
[7]   Conductance, contacts, and interface states in single alkanedithiol molecular junctions [J].
Kaun, Chao-Cheng ;
Seideman, Tamar .
PHYSICAL REVIEW B, 2008, 77 (03)
[8]   Direct force measurements on DNA in a solid-state nanopore [J].
Keyser, Ulrich F. ;
Koeleman, Bernard N. ;
Van Dorp, Stijn ;
Krapf, Diego ;
Smeets, Ralph M. M. ;
Lemay, Serge G. ;
Dekker, Nynke H. ;
Dekker, Cees .
NATURE PHYSICS, 2006, 2 (07) :473-477
[9]   Effect of Noise on DNA Sequencing via Transverse Electronic Transport [J].
Krems, Matt ;
Zwolak, Michael ;
Pershin, Yuriy V. ;
Di Ventra, Massimiliano .
BIOPHYSICAL JOURNAL, 2009, 97 (07) :1990-1996
[10]   Fast DNA sequencing via transverse electronic transport [J].
Lagerqvist, J ;
Zwolak, M ;
Di Ventra, M .
NANO LETTERS, 2006, 6 (04) :779-782