Conformational flexibility in amidophosphoesters: a CSD analysis completed with two new crystal structures of (C6H5O)2P(O)X [X = NHC7H13 and N(CH2C6H5)2]

被引:6
作者
Alviri, Banafsheh Vahdani [1 ]
Pourayoubi, Mehrdad [1 ]
Salam, Abdul Ajees Abdul [2 ]
Necas, Marek [3 ]
van der Lee, Arie [4 ]
Chithran, Akshara [2 ]
Damodaran, Krishnan [5 ]
机构
[1] Ferdowsi Univ Mashhad, Fac Sci, Dept Chem, Mashhad, Razavi Khorasan, Iran
[2] Manipal Acad Higher Educ, Ctr Appl Nanosci, Dept Atom & Mol Phys, Manipal 576104, Karnataka, India
[3] Masaryk Univ, Dept Chem, Kotlarska 2, Brno 61137, Czech Republic
[4] Univ Montpellier, Inst Europeen Membranes, F-34095 Montpellier, France
[5] Univ Pittsburgh, Dept Chem, Pittsburgh, PA 15260 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY | 2020年 / 76卷
关键词
amidophosphoester; conformational flexibility; Cambridge Structural Database; crystal structure; hydrogen bonding; energy framework; PHOSPHORIC TRIAMIDES; MOLECULAR-STRUCTURES; AB-INITIO; DERIVATIVES; DATABASE; LIGANDS; PACKING; PATTERNS; BEHAVIOR; ACID;
D O I
10.1107/S2053229619016619
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The crystal structures of diphenyl (cycloheptylamido)phosphate, C19H24NO3P or (C6H5O)(2)P(O)(NHC7H13), (I), and diphenyl (dibenzylamido)phosphate, C26H24NO3P or (C6H5O)(2)P(O)[N(CH2C6H5)(2)], (II), are reported. The NHC7H13 group in (I) provides two significant hydrogen-donor sites in N-H center dot center dot center dot O and C-H center dot center dot center dot O hydrogen bonds, needed for a one-dimensional hydrogen-bond pattern along [100] in the crystal, while (II), with a (C6H5CH2)(2)N moiety, lacks these hydrogen bonds, but its three-dimensional supramolecular structure is mediated by C-H center dot center dot center dot pi interactions. The conformational behaviour of the phenyl rings in (I), (II) and analogous structures from the Cambridge Structural Database (CSD) were studied in terms of flexibility, volume of the other group attached to phosphorus and packing forces. From this study, synclinal (+/- sc), anticlinal (+/- ac) and antiperiplanar (+/- ap) conformations were found to occur. In the structure of (II), there is an intramolecular Cortho-H center dot center dot center dot O interaction that imposes a +sc conformation for the phenyl ring involved. For the structures from the CSD, the +sc and +/- ap conformations appear to be mainly imposed by similar C-ortho-H center dot center dot center dot O intramolecular interactions. The large contribution of the C center dot center dot center dot H/H center dot center dot center dot C contacts (32.3%) in the two-dimensional fingerprint plots of (II) is a result of the C-H center dot center dot center dot pi interactions. The differential scanning calorimetry (DSC) analyses exhibit peak temperatures (T-m) at 109 and 81 degrees C for (I) and (II), respectively, which agree with the strengths of the intermolecular contacts and the melting points.
引用
收藏
页码:104 / +
页数:23
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