Applying Next-Generation Sequencing Platforms for Pharmacogenomic Testing in Clinical Practice

被引:30
作者
Tafazoli, Alireza [1 ,2 ]
Guchelaar, Henk-Jan [3 ,4 ]
Miltyk, Wojciech [1 ]
Kretowski, Adam J. [2 ,5 ]
Swen, Jesse J. [3 ,4 ]
机构
[1] Med Univ Bialystok, Fac Pharm, Dept Anal & Bioanal Med, Div Lab Med, Bialystok, Poland
[2] Med Univ Bialystok, Clin Res Ctr, Bialystok, Poland
[3] Leiden Univ, Dept Clin Pharm & Toxicol, Med Ctr, Leiden, Netherlands
[4] Leiden Network Personalized Therapeut, Leiden, Netherlands
[5] Med Univ Bialystok, Dept Endocrinol Diabetol & Internal Med, Bialystok, Poland
基金
欧盟地平线“2020”;
关键词
pharmacogenomics; clinical implementation; next generation sequencing; clinical practice; PGx testing; IMPLEMENTATION CONSORTIUM; INCIDENTAL FINDINGS; CYP2D6; DRUG; GENOTYPE; CHALLENGES; EXOME; RECOMMENDATIONS; INFORMATION; MUTATIONS;
D O I
10.3389/fphar.2021.693453
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Pharmacogenomics (PGx) studies the use of genetic data to optimize drug therapy. Numerous clinical centers have commenced implementing pharmacogenetic tests in clinical routines. Next-generation sequencing (NGS) technologies are emerging as a more comprehensive and time- and cost-effective approach in PGx. This review presents the main considerations for applying NGS in guiding drug treatment in clinical practice. It discusses both the advantages and the challenges of implementing NGS-based tests in PGx. Moreover, the limitations of each NGS platform are revealed, and the solutions for setting up and management of these technologies in clinical practice are addressed.
引用
收藏
页数:15
相关论文
共 50 条
  • [31] Current practices and guidelines for clinical next-generation sequencing oncology testing
    Samuel P.Strom
    Cancer Biology & Medicine, 2016, (01) : 3 - 11
  • [32] Current practices and guidelines for clinical next-generation sequencing oncology testing
    Strom, Samuel P.
    CANCER BIOLOGY & MEDICINE, 2016, 13 (01) : 3 - 11
  • [33] Targeted next-generation sequencing panels for monogenetic disorders in clinical diagnostics: the opportunities and challenges
    de Koning, Tom J.
    Jongbloed, Jan D. H.
    Sikkema-Raddatz, Birgit
    Sinke, Richard J.
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2015, 15 (01) : 61 - 70
  • [34] Next-Generation Sequencing for HIV Drug Resistance Testing: Laboratory, Clinical, and Implementation Considerations
    Avila-Rios, Santiago
    Parkin, Neil
    Swanstrom, Ronald
    Paredes, Roger
    Shafer, Robert
    Ji, Hezhao
    Kantor, Rami
    VIRUSES-BASEL, 2020, 12 (06):
  • [35] Analysis of Negative Results of Metagenomics Next-Generation Sequencing in Clinical Practice
    Qian, Mengjia
    Zhu, Bijun
    Zhan, Yanxia
    Wang, Lingyan
    Shen, Qi
    Zhang, Miaomiao
    Yue, Lei
    Wu, Duojiao
    Chen, Hao
    Wang, Xiangdong
    Cheng, Yunfeng
    FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2022, 12
  • [36] Good laboratory practice for clinical next-generation sequencing informatics pipelines
    Gargis, Amy S.
    Kalman, Lisa
    Bick, David P.
    da Silva, Cristina
    Dimmock, David P.
    Funke, Birgit H.
    Gowrisankar, Sivakumar
    Hegde, Madhuri R.
    Kulkarni, Shashikant
    Mason, Christopher E.
    Nagarajan, Rakesh
    Voelkerding, Karl V.
    Worthey, Elizabeth A.
    Aziz, Nazneen
    Barnes, John
    Bennett, Sarah F.
    Bisht, Himani
    Church, Deanna M.
    Dimitrova, Zoya
    Gargis, Shaw R.
    Hafez, Nabil
    Hambuch, Tina
    Hyland, Fiona C. L.
    Luna, Ruth Ann
    MacCannell, Duncan
    Mann, Tobias
    McCluskey, Megan R.
    McDaniel, Timothy K.
    Ganova-Raeval, Lilia M.
    Rehm, Heidi L.
    Reid, Jeffrey
    Campo, David S.
    Resnick, Richard B.
    Ridge, Perry G.
    Salit, Marc L.
    Skums, Pavel
    Wong, Lee-Jun C.
    Zehnbauer, Barbara A.
    Zook, Justin M.
    Lubin, Ira M.
    NATURE BIOTECHNOLOGY, 2015, 33 (07) : 689 - 693
  • [37] Next-generation sequencing in clinical microbiology
    Wain, John
    Mavrogiorgou, Eleni
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2013, 13 (03) : 225 - 227
  • [38] Review of Clinical Next-Generation Sequencing
    Yohe, Sophia
    Thyagarajan, Bharat
    ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2017, 141 (11) : 1544 - 1557
  • [39] Clinical Applications of Next-Generation Sequencing in Cancer Diagnosis
    Sabour, Leila
    Sabour, Maryam
    Ghorbian, Saeid
    PATHOLOGY & ONCOLOGY RESEARCH, 2017, 23 (02) : 225 - 234
  • [40] Recent Advances in the Clinical Application of Next-Generation Sequencing
    Ki, Chang-Seok
    PEDIATRIC GASTROENTEROLOGY HEPATOLOGY & NUTRITION, 2021, 24 (01) : 1 - 6