Thermodynamic and structural basis of phosphorylation-induced disorder-to-order transition in the regulatory light chain of smooth muscle myosin

被引:49
作者
Espinoza-Fonseca, L. Michel [1 ,2 ]
Kast, David [1 ]
Thomas, David D. [1 ]
机构
[1] Univ Minnesota, Dept Biochem Mol Biol & Biophys, Minneapolis, MN 55455 USA
[2] Escuela Nacl Ciencias Biol, Dept Bioquim, Mexico City 11340, DF, Mexico
关键词
D O I
10.1021/ja803143g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We have performed molecular dynamics simulations of the phosphorylation domain (PD) of the regulatory light chain (RLC) of smooth muscle myosin, to gain insight into the thermodynamic principles governing the phosphorylation-induced disorder-to-order transition. Simulations were performed in explicit water under near-physiological conditions, starting with an ideal a-helix. In the absence of phosphorylation,the helical periodicity of the peptide was disrupted at residues T9-K11, while phosphorylation significantly favored the helical periodicity, in agreement with experimental data. Using the MM/PBSA approach, we calculated a relative free energy of -7.1 kcal/mol for the disorder-to-order transition. A large enthalpic decrease was compensated by a large loss of conformational entropy, despite the small helical increase (no more than three residues) upon phosphorylation. Phosphorylation decreased the conformational dynamics of K and R side chains, especially R16, which forms a salt bridge with pS19. Mutation of R16 to A or E prevented this phosphorylation-dependent ordering. We propose that phosphorylation balances the enthalpy-entropy compensation of the disorder-to-order transition of RLC via short and long-range electrostatic interactions with positively charged residues of the phosphorylation domain. We suggest that this balance is necessary to induce a disorder-to-order conformational change through a subtle energy switching.
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页码:12208 / +
页数:4
相关论文
共 18 条
[1]   On the calculation of entropy from covariance matrices of the atomic fluctuations [J].
Andricioaei, I ;
Karplus, M .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (14) :6289-6292
[2]   Kinetics of smooth muscle heavy meromyosin with one thiophosphorylated head [J].
Ellison, PA ;
Sellers, JR ;
Cremo, CR .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (20) :15142-15151
[3]   Molecular dynamics Simulations reveal a disorder-to-order transition on phosphorylation of smooth muscle myosin [J].
Espinoza-Fonseca, L. Michel ;
Kast, David ;
Thomas, David D. .
BIOPHYSICAL JOURNAL, 2007, 93 (06) :2083-2090
[4]  
IKEBE M, 1994, J BIOL CHEM, V269, P28165
[5]  
IKEBE M, 1994, J BIOL CHEM, V269, P28173
[6]   Structural basis for control by phosphorylation [J].
Johnson, LN ;
Lewis, RJ .
CHEMICAL REVIEWS, 2001, 101 (08) :2209-2242
[7]   Phosphorylation-dependent conformational switch in spin-labeled phospholamban bound to SERCA [J].
Karim, CB ;
Zhang, ZW ;
Howard, EC ;
Torgersen, KD ;
Thomas, DD .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 358 (04) :1032-1040
[8]   Calculating structures and free energies of complex molecules: Combining molecular mechanics and continuum models [J].
Kollman, PA ;
Massova, I ;
Reyes, C ;
Kuhn, B ;
Huo, SH ;
Chong, L ;
Lee, M ;
Lee, T ;
Duan, Y ;
Wang, W ;
Donini, O ;
Cieplak, P ;
Srinivasan, J ;
Case, DA ;
Cheatham, TE .
ACCOUNTS OF CHEMICAL RESEARCH, 2000, 33 (12) :889-897
[9]   Improved treatment of the protein backbone in empirical force fields [J].
MacKerell, AD ;
Feig, M ;
Brooks, CL .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (03) :698-699
[10]   All-atom empirical potential for molecular modeling and dynamics studies of proteins [J].
MacKerell, AD ;
Bashford, D ;
Bellott, M ;
Dunbrack, RL ;
Evanseck, JD ;
Field, MJ ;
Fischer, S ;
Gao, J ;
Guo, H ;
Ha, S ;
Joseph-McCarthy, D ;
Kuchnir, L ;
Kuczera, K ;
Lau, FTK ;
Mattos, C ;
Michnick, S ;
Ngo, T ;
Nguyen, DT ;
Prodhom, B ;
Reiher, WE ;
Roux, B ;
Schlenkrich, M ;
Smith, JC ;
Stote, R ;
Straub, J ;
Watanabe, M ;
Wiórkiewicz-Kuczera, J ;
Yin, D ;
Karplus, M .
JOURNAL OF PHYSICAL CHEMISTRY B, 1998, 102 (18) :3586-3616