Modeling nucleotide excision repair and its impact on UV-induced mutagenesis during SOS-response in bacterial cells

被引:7
作者
Bugay, Aleksandr N. [1 ]
Krasavin, Evgeny A. [1 ]
Parkhomenko, Aleksandr Yu. [1 ]
Vasilyeva, Maria A. [1 ]
机构
[1] Joint Inst Nucl Res, Radiat Biol Lab, Dubna 141980, Moscow Region, Russia
关键词
UV mutagenesis; Mathematical modeling; DNA-DAMAGE RESPONSE; ESCHERICHIA-COLI; POLYMERASE-V; COPROTEASE ACTIVITIES; BIOCHEMICAL BASIS; HELICASE-II; PROTEIN; GENE; CLEAVAGE; UMUD;
D O I
10.1016/j.jtbi.2014.08.041
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
A model of the UV-induced mutation process in Escherichia coli bacteria has been developed taking into account the whole sequence of molecular events starting from initial photo-damage and finishing with the fixation of point mutations. The wild-type phenotype bacterial cells are compared with UV-sensitive repair-deficient mutant cells. Attention is mainly paid to excision repair system functioning as regards induced mutagenesis. (C) 2014 Elsevier Ltd. All rights reserved.
引用
收藏
页码:7 / 20
页数:14
相关论文
共 71 条
[61]   Roles of E-coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis [J].
Tang, MJ ;
Pham, P ;
Shen, X ;
Taylor, JS ;
O'Donnell, M ;
Woodgate, R ;
Goodman, MF .
NATURE, 2000, 404 (6781) :1014-1018
[62]   SINGLE-STRAND BREAKAGE OF DNA IN UV-IRRADIATED UVRA, UVRB, AND UVRC MUTANTS OF ESCHERICHIA-COLI [J].
TANG, MS ;
ROSS, L .
JOURNAL OF BACTERIOLOGY, 1985, 161 (03) :933-938
[63]   NUCLEOTIDE EXCISION REPAIR IN ESCHERICHIA-COLI [J].
VANHOUTEN, B .
MICROBIOLOGICAL REVIEWS, 1990, 54 (01) :18-51
[64]   Exonuclease X of Escherichia coli -: A novel 3′-5′ DNase and DnaQ superfamily member involved in DNA repair [J].
Viswanathan, M ;
Lovett, ST .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (42) :30094-30100
[65]   A model for the abrogation of the SOS response by an SOS protein: a negatively charged helix in DinI mimics DNA in its interaction with RecA [J].
Voloshin, ON ;
Ramirez, BE ;
Bax, A ;
Camerini-Otero, RD .
GENES & DEVELOPMENT, 2001, 15 (04) :415-427
[66]   Translesion synthesis by the UmuC family of DNA polymerases [J].
Wang, ZG .
MUTATION RESEARCH-DNA REPAIR, 2001, 486 (02) :59-70
[67]   ULTRAVIOLET MUTAGENESIS AND INDUCIBLE DNA-REPAIR IN ESCHERICHIA-COLI [J].
WITKIN, EM .
BACTERIOLOGICAL REVIEWS, 1976, 40 (04) :869-907
[68]   LEVELS OF CHROMOSOMALLY ENCODED UMU PROTEINS AND REQUIREMENTS FOR INVIVO UMUD CLEAVAGE [J].
WOODGATE, R ;
ENNIS, DG .
MOLECULAR & GENERAL GENETICS, 1991, 229 (01) :10-16
[69]   UMUC MUTAGENESIS PROTEIN OF ESCHERICHIA-COLI - PURIFICATION AND INTERACTION WITH UMUD AND UMUD' [J].
WOODGATE, R ;
RAJAGOPALAN, M ;
CHI, L ;
ECHOLS, H .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (19) :7301-7305
[70]   Inhibition of Escherichia coli RecA coprotease activities by DinI [J].
Yasuda, T ;
Morimatsu, K ;
Horii, T ;
Nagata, T ;
Ohmori, H .
EMBO JOURNAL, 1998, 17 (11) :3207-3216