A framework to establish credibility of computational models in biology

被引:45
|
作者
Patterson, Eann A. [1 ]
Whelan, Maurice P. [2 ]
机构
[1] Univ Liverpool, Sch Engn, Liverpool, Merseyside, England
[2] European Commiss, Joint Res Ctr, Ispra, Italy
关键词
Computational biology; Computational models; Credibility; Validation; In silico medicine; Biomedical modelling; VALIDATION; SIMULATIONS; CONFIRMATION; VERIFICATION; UNCERTAINTY;
D O I
10.1016/j.pbiomolbio.2016.08.007
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Computational models in biology and biomedical science are often constructed to aid people's understanding of phenomena or to inform decisions with socioeconomic consequences. Model credibility is the willingness of people to trust a model's predictions and is often difficult to establish for computational biology models. A 3 x 3 matrix has been proposed to allow such models to be categorised with respect to their testability and epistemic foundation in order to guide the selection of an appropriate process of validation to supply evidence to establish credibility. Three approaches to validation are identified that can be deployed depending on whether a model is deemed untestable, testable or lies somewhere in between. In the latter two cases, the validation process involves the quantification of uncertainty which is a key output. The issues arising due to the complexity and inherent variability of biological systems are discussed and the creation of 'digital twins' proposed as a means to alleviate the issues and provide a more robust, transparent and traceable route to model credibility and acceptance. (C) 2016 The Authors. Published by Elsevier Ltd.
引用
收藏
页码:13 / 19
页数:7
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