Deep learning fully convolution network for lumen characterization in diabetic patients using carotid ultrasound: a tool for stroke risk

被引:57
作者
Biswas, Mainak [1 ]
Kuppili, Venkatanareshbabu [1 ]
Saba, Luca [2 ]
Edla, Damodar Reddy [1 ]
Suri, Harman S. [3 ,4 ]
Sharma, Aditya [5 ]
Cuadrado-Godia, Elisa [6 ]
Laird, John R. [7 ]
Nicolaides, Andrew [8 ,9 ]
Suri, Jasjit S. [4 ]
机构
[1] NIT Goa, Dept Comp Sci & Engn, Ponda, India
[2] AOU Cagliari, Dept Radiol, Cagliari, Italy
[3] Brown Univ, Providence, RI 02912 USA
[4] AtheroPoint, Monitoring & Diagnost Div, Roseville, CA 95661 USA
[5] Univ Virginia, Div Cardiovasc, Charlottesville, VA USA
[6] IMIM Hosp Mar, Dept Neurol, Passeig Maritim 25-29, Barcelona, Spain
[7] Helena Hosp, St Helena, CA USA
[8] Vasc Screening & Diagnost Ctr, London, England
[9] Univ Cyprus, Dept Biol Sci, Nicosia, Cyprus
关键词
Stroke; Ultrasound; Carotid; Lumen diameter; Deep learning; CNN; Performance; INTIMA-MEDIA THICKNESS; WALL THICKNESS; MYOCARDIAL-INFARCTION; ARTERY; SEGMENTATION; DIAMETER; STENOSIS; IMAGES; PLAQUE; ATHEROSCLEROSIS;
D O I
10.1007/s11517-018-1897-x
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Manual ultrasound (US)-based methods are adapted for lumen diameter (LD) measurement to estimate the risk of stroke but they are tedious, error prone, and subjective causing variability. We propose an automated deep learning (DL)-based system for lumen detection. The system consists of a combination of two DL systems: encoder and decoder for lumen segmentation. The encoder employs a 13-layer convolution neural network model (CNN) for rich feature extraction. The decoder employs three up-sample layers of fully convolution network (FCN) for lumen segmentation. Three sets of manual tracings were used during the training paradigm leading to the design of three DL systems. Cross-validation protocol was implemented for all three DL systems. Using the polyline distance metric, the precision of merit for three DL systems over 407 US scans was 99.61%, 97.75%, and 99.89%, respectively. The Jaccard index and Dice similarity of DL lumen segmented region against three ground truth (GT) regions were 0.94, 0.94, and 0.93 and 0.97, 0.97, and 0.97, respectively. The corresponding AUC for three DL systems was 0.95, 0.91, and 0.93. The experimental results demonstrated superior performance of proposed deep learning system over conventional methods in literature.
引用
收藏
页码:543 / 564
页数:22
相关论文
共 44 条
[11]   Multi-atlas segmentation of biomedical images: A survey [J].
Eugenio Iglesias, Juan ;
Sabuncu, Mert R. .
MEDICAL IMAGE ANALYSIS, 2015, 24 (01) :205-219
[12]  
Garcia BP, 2017, MEMORIA VIVIDA Y LA MEMORIA CONTADA: PORTUGAL Y LA DIFUSION POPULAR DE LA HISTORIA EN LA NOVELA HISTORICA DE ACTUALIDAD, P1
[13]   Using the hough transform to segment ultrasound images of longitudinal and transverse sections of the carotid artery [J].
Golemati, Spyretta ;
Stoitsis, John ;
Sifakis, Emmanouil G. ;
Balkizas, Thomas ;
Nikita, Konstantina S. .
ULTRASOUND IN MEDICINE AND BIOLOGY, 2007, 33 (12) :1918-1932
[14]   Automatic mea surement of carotid diameter and wall thickness in ultrasound images [J].
Gutierrez, MA ;
Pilon, PE ;
Lage, SG ;
Kopel, L ;
Carvalho, RT ;
Furuie, SS .
COMPUTERS IN CARDIOLOGY 2002, VOL 29, 2002, 29 :359-362
[15]   Cell segmentation in histopathological images with deep learning algorithms by utilizing spatial relationships [J].
Hatipoglu, Nuh ;
Bilgin, Gokhan .
MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, 2017, 55 (10) :1829-1848
[16]   Non-invasive measurement of mechanical properties of arteries in health and disease [J].
Hoeks, APG ;
Brands, PJ ;
Willigers, JM ;
Reneman, RS .
PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART H-JOURNAL OF ENGINEERING IN MEDICINE, 1999, 213 (H3) :195-202
[17]   The influence of acoustic impedance mismatch on poststenotic pulsed-Doppler ultrasound measurements in a coronary artery model [J].
Jones, SA ;
Leclerc, H ;
Chatzimavroudis, GP ;
Kim, YH ;
Scott, NA ;
Yoganathan, AP .
ULTRASOUND IN MEDICINE AND BIOLOGY, 1996, 22 (05) :623-634
[18]  
Kumar PM., 2017, MULTIMED TOOLS APPL, P1
[19]   Extreme Learning Machine Framework for Risk Stratification of Fatty Liver Disease Using Ultrasound Tissue Characterization [J].
Kuppili, Venkatanareshbabu ;
Biswas, Mainak ;
Sreekumar, Aswini ;
Suri, Harman S. ;
Saba, Luca ;
Edla, Damodar Reddy ;
Marinhoe, Rui Tato ;
Miguel Sanches, J. ;
Suri, Jasjit S. .
JOURNAL OF MEDICAL SYSTEMS, 2017, 41 (10)
[20]   Deep learning [J].
LeCun, Yann ;
Bengio, Yoshua ;
Hinton, Geoffrey .
NATURE, 2015, 521 (7553) :436-444