MiniSTR multiplex systems based on non-CODIS loci for analysis of degraded DNA samples

被引:21
作者
Asamura, R. [1 ]
Fujimori, S. [1 ]
Ota, A. [1 ]
Fukushima, H. [1 ]
机构
[1] Shinshu Univ, Sch Med, Dept Legal Med, Matsumoto, Nagano 3908621, Japan
关键词
autosomal miniSTR; quadruplex; non-CODIS loci; Japanese population; degraded DNA;
D O I
10.1016/j.forsciint.2007.01.015
中图分类号
DF [法律]; D9 [法律]; R [医药、卫生];
学科分类号
0301 ; 10 ;
摘要
We describe two short amplicon autosomal short tandem repeat (miniSTR) quadruplex systems for eight loci D1S1171, D2S1242, D3S1545, D4S2366, D12S391, D16S3253, D20S161, and D21S1437, unlinked from the combined DNA index system (non-CODIS) loci, using newly designed primer sets. The results of an assay of 411 Japanese individuals showed that polymerase chain reaction (PCR) products within the eight loci were less than 150 bp in size, without the seven additional bases for adenylation. The frequency distributions in the loci showed no deviations from Hardy-Weinberg equilibrium expectations. The accumulated power of discrimination and power of exclusion for the eight loci were 0.9999999991 and 0.998, respectively. For assay of highly degraded DNA, including artificially degraded samples and the degraded forensic casework samples assessed with the present miniSTR quadruplex systems, the systems proved quite effective in analyzing degraded DNA. (C) 2007 Elsevier Ireland Ltd. All rights reserved.
引用
收藏
页码:7 / 15
页数:9
相关论文
共 32 条
[1]  
[Anonymous], POW VERS 1 2
[2]   HLA genotyping of 5,000-and 6,000-year-old ancient bones in Japan [J].
Anzai, T ;
Naruse, TK ;
Tokunaga, K ;
Honma, T ;
Baba, H ;
Akazawa, T ;
Inoko, H .
TISSUE ANTIGENS, 1999, 54 (01) :53-58
[3]   MiniX-STR multiplex system population study in Japan and application to degraded DNA analysis [J].
Asamura, H ;
Sakai, H ;
Kobayashi, K ;
Ota, M ;
Fukushima, H .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2006, 120 (03) :174-181
[4]   MiniY-STR quadruplex systems with short amplicon lengths for analysis of degraded DNA samples [J].
Asamura, H. ;
Sakai, H. ;
Ota, M. ;
Fukushima, H. .
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2007, 1 (01) :56-61
[5]   Allele frequencies of the six miniSTR loci in a population from Japan [J].
Asamura, H ;
Uchida, R ;
Takayanagi, K ;
Ota, M ;
Fukushima, H .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2006, 120 (03) :182-184
[6]   Population data on the seven short tandem repeat loci D4S2366, D6S474, D14S608, D19S246, D20S480, D21S226 and D22S689 in a German population [J].
Becker, Dorit ;
Vogelsang, Dorit ;
Brabetz, Werner .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2007, 121 (01) :78-81
[7]   Modulation of non-templated nucleotide addition by taq DNA polymerase: Primer modifications that facilitate genotyping [J].
Brownstein, MJ ;
Carpten, JD ;
Smith, JR .
BIOTECHNIQUES, 1996, 20 (06) :1004-+
[8]  
Butler JM, 2003, J FORENSIC SCI, V48, P1054
[9]   Frequency data on four tetrameric STR loci D18S1270, D14S608, D16S3253 and D21S1437 in a Korean population [J].
Choi, M ;
Kim, JH ;
Lee, DH ;
Lee, SH ;
Rho, HM .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2000, 113 (03) :179-180
[10]  
Coble MD, 2005, J FORENSIC SCI, V50, P43