Characterization of the complete chloroplast genome of a Peruvian landrace of Capsicum chinense Jacq. (Solanaceae), arnaucho chili pepper

被引：1

作者：

Arbizu, Carlos, I ^{[1
]}

Saldana, Carla L. ^{[1
]}

Ferro-Mauricio, Ruben D. ^{[1
]}

Chavez-Galarza, Julio C. ^{[1
]}

Herrera, Jordan ^{[1
]}

Contreras-Liza, Sergio ^{[2
]}

Guerrero-Abad, Juan C. ^{[3
]}

Maicelo, Jorge L. ^{[1
]}

机构：

[1] Inst Nacl Innovac Agr INIA, Direcc Desarrollo Tecnol Agr, Lima, Peru

[2] Univ Nacl Jose Faustino Sanchez Carrion, Fac Ingn Agr Ind Alimentarias & Ambiental, Lima, Peru

[3] Inst Nacl Innovac Agr INIA, Direcc Recursos Genet & Biotecnol, Lima, Peru

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2022年 / 7卷 / 01期

关键词：

NGS; chloroplast; genetic resources; arnaucho; phylogenomics; SEQUENCE;

D O I：

10.1080/23802359.2021.2014366

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, we sequenced the first complete chloroplast (cp) genome of a Peruvian chili pepper landrace, "arnacucho" (Capsicum chinense). This cp genome has a 156,931 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (87,325 bp) and a 17,912 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (25,847 bp); and the percentage of GC content was 37.71%. Arnaucho chili pepper chloroplast genome possesses 133 genes that consists of 86 protein-coding genes, 37 tRNA, eight rRNA, and two pseudogenes. Phylogenetic analysis revealed that this Peruvian chili pepper landrace is closely related to the undomesticated species C. galapagoense; all belong to the Capsiceae tribe.

引用

页码：156 / 158

页数：3

共 18 条

[1] Aliaga J, 2019, PERUV AGR RES, V1, P58
[2] Genotyping-by-sequencing provides the discriminating power to investigate the subspecies of Daucus carota (Apiaceae)
Arbizu, Carlos I.
Ellison, Shelby L.
Senalik, Douglas
Simon, Philipp W.
Spooner, David M.
[J]. BMC EVOLUTIONARY BIOLOGY, 2016, 16 : 1 - 16
[3] Integrated Molecular and Morphological Studies of the Daucus guttatus Complex (Apiaceae)
Arbizu, Carlos I.
Simon, Philipp W.
Martinez-Flores, Fernando
Ruess, Holly
Crespo, Manuel B.
Spooner, David M.
[J]. SYSTEMATIC BOTANY, 2016, 41 (02) : 479 - 492
[4] Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae)
Carrizo Garcia, Carolina
Barfuss, Michael H. J.
Sehr, Eva M.
Barboza, Gloria E.
Samuel, Rosabelle
Moscone, Eduardo A.
Ehrendorfer, Friedrich
[J]. ANNALS OF BOTANY, 2016, 118 (01) : 35 - 51
[5] The Complete Plastome Sequences of Eleven Capsicum Genotypes: Insights into DNA Variation and Molecular Evolution
D'Agostino, Nunzio
Tamburino, Rachele
Cantarella, Concita
De Carluccio, Valentina
Sannino, Lorenza
Cozzolino, Salvatore
Cardi, Teodoro
Scotti, Nunzia
[J]. GENES, 2018, 9 (10)
[6] Doyle JJ., 1987, FOCUS, V19, P11, DOI DOI 10.2307/2419362
[7] Genetic Relationships Within and Between Capsicum Species
Ince, Ayse Gul
Karaca, Mehmet
Onus, A. Naci
[J]. BIOCHEMICAL GENETICS, 2010, 48 (1-2) : 83 - 95
[8] GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Jin, Jian-Jun
Yu, Wen-Bin
Yang, Jun-Bo
Song, Yu
dePamphilis, Claude W.
Yi, Ting-Shuang
Li, De-Zhu
[J]. GENOME BIOLOGY, 2020, 21 (01)
[9] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, Kazutaka
Standley, Daron M.
[J]. MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) : 772 - 780
[10] Martin M., 2011, EMBnet.journal, V17, P10, DOI [DOI 10.14806/EJ.17.1.200, 10.14806/ej.17.1.200]

← 1 2 →