Exploring phase spaces of biomolecules with Monte Carlo methods

被引:0
作者
Butu, A [1 ]
机构
[1] Natl Inst Res & Dev Biol Sci, Bucharest, Romania
来源
JOURNAL OF OPTOELECTRONICS AND ADVANCED MATERIALS | 2005年 / 7卷 / 03期
关键词
Monte Carlo method; biomolecules conformations; metropolis algoritm;
D O I
暂无
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
Monte Carlo (MC) methods have become an important tool in biophysics, structural molecular biology and rational drug design. They are used to predict quantities that either cannot be measured directly or when accurate experimental data are difficult to obtain. They are also helpful for the interpretation of experimental results since in a simulation the system of interest can be studied in detail on the molecular level.
引用
收藏
页码:1563 / 1571
页数:9
相关论文
共 24 条
[1]   STATICS AND DYNAMICS OF THE FREELY JOINTED POLYMER-CHAIN WITH LENNARD-JONES INTERACTION [J].
BAUMGARTNER, A .
JOURNAL OF CHEMICAL PHYSICS, 1980, 72 (02) :871-879
[2]  
BINDER K, 1988, MONTR CARLO SIMULATI
[3]   HYBRID MONTE-CARLO SIMULATION OF SILICA [J].
BROTZ, FA ;
DEPABLO, JJ .
CHEMICAL ENGINEERING SCIENCE, 1994, 49 (17) :3015-3031
[4]   MONTE-CARLO METHODS FOR ACCELERATING BARRIER CROSSING - ANTI-FORCE-BIAS AND VARIABLE STEP ALGORITHMS [J].
CAO, JS ;
BERNE, BJ .
JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (03) :1980-1985
[5]  
Chiu SW, 1999, J COMPUT CHEM, V20, P1153, DOI 10.1002/(SICI)1096-987X(199908)20:11<1153::AID-JCC6>3.0.CO
[6]  
2-K
[7]   HIGHER-ORDER HYBRID MONTE-CARLO ALGORITHMS [J].
CREUTZ, M ;
GOCKSCH, A .
PHYSICAL REVIEW LETTERS, 1989, 63 (01) :9-12
[8]   INTERDIFFUSION AND SELF-DIFFUSION IN POLYMER MIXTURES - A MONTE-CARLO STUDY [J].
DEUTSCH, HP ;
BINDER, K .
JOURNAL OF CHEMICAL PHYSICS, 1991, 94 (03) :2294-2304
[9]   HYBRID MONTE-CARLO [J].
DUANE, S ;
KENNEDY, AD ;
PENDLETON, BJ ;
ROWETH, D .
PHYSICS LETTERS B, 1987, 195 (02) :216-222
[10]   ERROR-ESTIMATES ON AVERAGES OF CORRELATED DATA [J].
FLYVBJERG, H ;
PETERSEN, HG .
JOURNAL OF CHEMICAL PHYSICS, 1989, 91 (01) :461-466