Sequences Encoding a Novel Toursvirus Identified from Southern and Northern Corn Rootworms (Coleoptera: Chrysomelidae)

被引:1
作者
Liu, Sijun [1 ]
Sappington, Thomas W. [2 ]
Coates, Brad S. [2 ]
Bonning, Bryony C. [3 ]
机构
[1] Iowa State Univ, Dept Entomol, Ames, IA 50011 USA
[2] USDA ARS, Corn Insects & Crop Genet Res Unit, Ames, IA 50011 USA
[3] Univ Florida, Dept Entomol & Nematol, Gainesville, FL 32611 USA
来源
VIRUSES-BASEL | 2022年 / 14卷 / 02期
基金
美国食品与农业研究所;
关键词
Ascoviridae; toursvirust; beetle; corn rootworm; Diabrotica spp; DIADROMUS-PULCHELLUS ASCOVIRUS; SPOTTED CUCUMBER BEETLE; GENOMIC SEQUENCE; VIRUS; ORGANIZATION; MANAGEMENT; RESISTANCE; PARTICLES; APOPTOSIS;
D O I
10.3390/v14020397
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Sequences derived from a novel toursvirus were identified from pooled genomic short read data from U.S. populations of southern corn rootworm (SCR, Diabrotica undecimpunctata howardi Barber) and northern corn rootworm (NCR, Diabrotica barberi Smith & Lawrence). Most viral sequences were identified from the SCR genomic dataset. As proteins encoded by toursvirus sequences from SCR and NCR were almost identical, the contig sets from SCR and NCR were combined to generate 26 contigs. A total of 108,176 bp were assembled from these contigs, with 120 putative toursviral ORFs identified indicating that most of the viral genome had been recovered. These ORFs included all 40 genes that are common to members of the Ascoviridae. Two genes typically present in Ascoviridae (ATP binding cassette transport system permeases and Baculovirus repeated open reading frame), were not detected. There was evidence for transposon insertion in viral sequences at different sites in the two host species. Phylogenetic analyses based on a concatenated set of 45 translated protein sequences clustered toursviruses into a distinct clade. Based on the combined evidence, we propose taxonomic separation of toursviruses from Ascoviridae.
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页数:16
相关论文
共 51 条
[11]   The Insect Virome: Opportunities and Challenges [J].
Bonning, Bryony C. .
CURRENT ISSUES IN MOLECULAR BIOLOGY, 2019, 34 :1-12
[12]   Ultrafast Approximation for Phylogenetic Bootstrap [J].
Bui Quang Minh ;
Minh Anh Thi Nguyen ;
von Haeseler, Arndt .
MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (05) :1188-1195
[13]   Field-Evolved Resistance of Northern and Western Corn Rootworm (Coleoptera: Chrysomelidae) Populations to Corn Hybrids Expressing Single and Pyramided Cry3Bb1 and Cry34/35Ab1 Bt Proteins in North Dakota [J].
Calles-Torrez, Veronica ;
Knodel, Janet J. ;
Boetel, Mark A. ;
French, B. Wade ;
Fuller, Billy W. ;
Ransom, Joel K. .
JOURNAL OF ECONOMIC ENTOMOLOGY, 2019, 112 (04) :1875-1886
[14]   Genomic analysis of a novel isolate Heliothis virescens ascovirus 3i (HvAV-3i) and identification of ascoviral repeat ORFs (aros) [J].
Chen, Zi-Shu ;
Hou, Dian-Hai ;
Cheng, Xiao-Wen ;
Wang, Xing ;
Huang, Guo-Hua .
ARCHIVES OF VIROLOGY, 2018, 163 (10) :2849-2853
[15]   Assembly and annotation of full mitochondrial genomes for the corn rootworm species, Diabrotica virgifera virgifera and Diabrotica barberi (Insecta: Coleoptera: Chrysomelidae), using Next Generation Sequence data [J].
Coates, Brad S. .
GENE, 2014, 542 (02) :190-197
[16]   NONOCCLUDED, CYTOPLASMIC VIRUS-PARTICLES AND RICKETTSIA-LIKE ORGANISMS IN TESTES AND SPERMATHECAE OF DIABROTICA-VIRGIFERA [J].
DEGRUGILLIER, ME ;
DEGRUGILLIER, SS ;
JACKSON, JJ .
JOURNAL OF INVERTEBRATE PATHOLOGY, 1991, 57 (01) :50-58
[17]  
Desfarges S, 2012, VIRUSES ESSENTIAL AG
[18]   Retroviral Integration Site Selection [J].
Desfarges, Sebastien ;
Ciuffi, Angela .
VIRUSES-BASEL, 2010, 2 (01) :111-130
[19]   UFBoot2: Improving the Ultrafast Bootstrap Approximation [J].
Diep Thi Hoang ;
Chernomor, Olga ;
von Haeseler, Arndt ;
Minh, Bui Quang ;
Le Sy Vinh .
MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (02) :518-522
[20]  
Federici BA, 2009, CURR TOP MICROBIOL, V328, P171