Complete genome sequence of Leadbetterella byssophila type strain (4M15T)

被引：15

作者：

Abt, Birte ^{[2
]}

Teshima, Hazuki ^{[1
,3
]}

Lucas, Susan ^{[1
]}

Lapidus, Alla ^{[1
]}

Del Rio, Tijana Glavina ^{[1
]}

Nolan, Matt ^{[1
]}

Tice, Hope ^{[1
]}

Cheng, Jan-Fang ^{[1
]}

Pitluck, Sam ^{[1
]}

Liolios, Konstantinos ^{[1
]}

Pagani, Ioanna ^{[1
]}

Ivanova, Natalia ^{[1
]}

Mavromatis, Konstantinos ^{[1
]}

Pati, Amrita ^{[1
]}

Tapia, Roxane ^{[1
,3
]}

Han, Cliff ^{[1
,3
]}

Goodwin, Lynne ^{[1
,3
]}

Chen, Amy ^{[4
]}

Palaniappan, Krishna ^{[4
]}

Land, Miriam ^{[1
,5
]}

Hauser, Loren ^{[1
,5
]}

Chang, Yun-Juan ^{[1
,5
]}

Jeffries, Cynthia D. ^{[1
,5
]}

Rohde, Manfred ^{[6
]}

Goeker, Markus ^{[2
]}

Tindall, Brian J. ^{[2
]}

Detter, John C. ^{[1
,3
]}

Woyke, Tanja ^{[1
]}

Bristow, James ^{[1
]}

Eisen, Jonathan A. ^{[1
,7
]}

Markowitz, Victor ^{[4
]}

Hugenholtz, Philip ^{[1
,8
]}

Klenk, Hans-Peter ^{[2
]}

Kyrpides, Nikos C. ^{[1
]}

机构：

[1] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

[2] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[3] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[4] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[5] Lawrence Livermore Natl Lab, Livermore, CA USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

[8] Univ Queensland, Sch Chem & Mol Biosci, Australian Ctr Ecogenom, Brisbane, Qld, Australia

来源：

STANDARDS IN GENOMIC SCIENCES | 2011年 / 4卷 / 01期

关键词：

non-motile; non-sporulating; aerobic; mesophile; Gram-negative; flexirubin; Cytophagaceae; GEBA; SP-NOV; GEN.-NOV; FAMILY FLEXIBACTERACEAE; PHYLOGENETIC ANALYSIS; BACTERIA; ARCHAEA; IDENTIFICATION; ALGORITHM; DATABASE; SYSTEM;

D O I：

10.4056/sigs.1413518

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Leadbetterella byssophila Weon et al. 2005 is the type species of the genus Leadbetterella of the family Cytophagaceae in the phylum Bacteroidetes. Members of the phylum Bacteroidetes are widely distributed in nature, especially in aquatic environments. They are of special interest for their ability to degrade complex biopolymers. L. byssophila occupies a rather isolated position in the tree of life and is characterized by its ability to hydrolyze starch and gelatine, but not agar, cellulose or chitin. Here we describe the features of this organism, together with the complete genome sequence, and annotation. L. byssophila is already the 16(th) member of the family Cytophagaceae whose genome has been sequenced. The 4,059,653 bp long single replicon genome with its 3,613 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：2 / 12

页数：11

共 43 条

[11] Garrity GMHJ., 2001, Bergey's Manual of System-atic Bacteriology, V1, P155
[12] GEMEINHOLZER B, BIOPRESERV IN PRESS
[13] Hahn Martin W., INT J SYST EVOL MICR, V60, P2946, DOI [10.1099/ijs.0.022384-0, DOI 10.1099/IJS.0.019398-0, DOI 10.1099/IJS.0.022384-0]
[14] Plant host habitat and root exudates shape soil bacterial community structure
Haichar, Feth el Zahar
Marol, Christine
Berge, Odile
Rangel-Castro, J. Ignacio
Prosser, James I.
Balesdent, Jerome
Heulin, Thierry
Achouak, Wafa
[J]. ISME JOURNAL, 2008, 2 (12) : 1221 - 1230
[15] Prodigal: prokaryotic gene recognition and translation initiation site identification
Hyatt, Doug
Chen, Gwo-Liang
LoCascio, Philip F.
Land, Miriam L.
Larimer, Frank W.
Hauser, Loren J.
[J]. BMC BIOINFORMATICS, 2010, 11
[16] Parapedobacter luteus sp nov and Parapedobacter composti sp nov., isolated from cotton waste compost
Kim, Soo-Jin
Weon, Hang-Yeon
Kim, Yi-Seul
Yoo, Seung-Hee
Kim, Byung-Yong
Anandham, Rangasamy
Kwon, Soon-Wo
[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 : 1849 - 1853
[17] En route to a genome-based classification of Archaea and Bacteria?
Klenk, H. -P.
Goeker, M.
[J]. SYSTEMATIC AND APPLIED MICROBIOLOGY, 2010, 33 (04) : 175 - 182
[18] KRZEMIENIEWSKA H., 1933, ARCH MIKROBIOL, V4, P394, DOI 10.1007/BF00407552
[19] Complete genome sequence of Spirosoma linguale type strain (1T)
Lail, Kathleen
Sikorski, Johannes
Saunders, Elizabeth
Lapidus, Alla
Del Rio, Tijana Glavina
Copeland, Alex
Tice, Hope
Cheng, Jan-Fang
Lucas, Susan
Nolan, Matt
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ivanova, Natalia
Mavromatis, Konstantinos
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Chain, Patrick
Brettin, Thomas
Detter, John C.
Schuetze, Andrea
Rohde, Manfred
Tindall, Brian J.
Goeker, Markus
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klen, Hans-Peter
Chen, Feng
[J]. STANDARDS IN GENOMIC SCIENCES, 2010, 2 (02): : 176 - 185
[20] Complete genome sequence of Dyadobacter fermentans type strain (NS114T)
Lang, Elke
Lapidus, Alla
Chertkov, Olga
Brettin, Thomas
Detter, John C.
Han, Cliff
Copeland, Alex
Del Rio, Tijana Glavina
Nolan, Matt
Chen, Feng
Lucas, Susan
Tice, Hope
Cheng, Jan-Fang
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Kopitz, Marcus
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Ovchinnikova, Galina
Pati, Amrita
Ivanova, Natalia
Mavrommatis, Konstantinos
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Bristow, Jim
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Goeker, Markus
Rohde, Manfred
Kyrpides, Nikos C.
Klenk, Hans-Peter
[J]. STANDARDS IN GENOMIC SCIENCES, 2009, 1 (02): : 133 - 140

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