GWAS for discovery and replication of genetic loci associated with sudden cardiac arrest in patients with coronary artery disease

被引:52
作者
Aouizerat, Bradley E. [2 ]
Vittinghoff, Eric [3 ]
Musone, Stacy L.
Pawlikowska, Ludmila [4 ]
Kwok, Pui-Yan [5 ]
Olgin, Jeffrey E. [1 ]
Tseng, Zian H. [1 ]
机构
[1] Univ Calif San Francisco, Dept Med, Div Cardiol, Sect Cardiac Electrophysiol,Inst Human Genet, San Francisco, CA 94143 USA
[2] Univ Calif San Francisco, Inst Human Genet, Dept Physiol Nursing, San Francisco, CA 94143 USA
[3] Univ Calif San Francisco, Dept Epidemiol & Biostat, San Francisco, CA 94143 USA
[4] Univ Calif San Francisco, Inst Human Genet, Dept Anesthesia & Perioperat Care, San Francisco, CA 94143 USA
[5] Univ Calif San Francisco, Cardiovasc Res Inst, Inst Human Genet, San Francisco, CA 94143 USA
基金
美国国家卫生研究院;
关键词
NOS1 REGULATOR NOS1AP; RISK-FACTOR; DEATH; POLYMORPHISMS; VARIANT; REPOLARIZATION; FAMILIES; PROTEIN; HEART;
D O I
10.1186/1471-2261-11-29
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background: Epidemiologic evidence suggests a heritable component to risk for sudden cardiac arrest independent of risk for myocardial infarction. Recent candidate gene association studies for community sudden cardiac arrests have focused on a limited number of biological pathways and yielded conflicting results. We sought to identify novel gene associations for sudden cardiac arrest in patients with coronary artery disease by performing a genome-wide association study. Methods: Tagging SNPs (n = 338,328) spanning the genome were typed in a case-control study comparing 89 patients with coronary artery disease and sudden cardiac arrest due to ventricular tachycardia or ventricular fibrillation to 520 healthy controls. Results: Fourteen SNPs including 7 SNPs among 7 genes (ACYP2, AP1G2, ESR1, DGES2, GRIA1, KCTD1, ZNF385B) were associated with sudden cardiac arrest (all p < 1.30 x 10(-7)), following Bonferroni correction and adjustment for population substructure, age, and sex; genetic variation in ESR1 (p = 2.62 x 10(-8); Odds Ratio [OR] = 1.43, 95% confidence interval [CI]: 1.277, 1.596) has previously been established as a risk factor for cardiovascular disease. In tandem, the role of 9 genes for monogenic long QT syndrome (LQT1-9) was assessed, yielding evidence of association with CACNA1C (LQT8; p = 3.09 x 10(-4); OR = 1.18, 95% CI: 1.079, 1.290). We also assessed 4 recently published gene associations for sudden cardiac arrest, validating NOS1AP (p = 4.50 x 10(-2), OR = 1.15, 95% CI: 1.003, 1.326), CSMD2 (p = 6.6 x 10(-3), OR = 2.27, 95% CI: 1.681, 2.859), and AGTR1 (p = 3.00 x 10(-3), OR = 1.13, 95% CI: 1.042, 1.215). Conclusion: We demonstrate 11 gene associations for sudden cardiac arrest due to ventricular tachycardia/ventricular fibrillation in patients with coronary artery disease. Validation studies in independent cohorts and functional studies are required to confirm these associations.
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页数:10
相关论文
共 36 条
[1]   A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization [J].
Arking, Dan E. ;
Pfeufer, Arne ;
Post, Wendy ;
Kao, W. H. Linda ;
Newton-Cheh, Christopher ;
Ikeda, Morna ;
West, Kristen ;
Kashuk, Carl ;
Akyol, Mahmut ;
Perz, Siegfried ;
Jalilzadeh, Shapour ;
Illig, Thomas ;
Gieger, Christian ;
Guo, Chao-Yu ;
Larson, Martin G. ;
Wichmann, H. Erich ;
Marban, Eduardo ;
O'Donnell, Christopher J. ;
Hirschhorn, Joel N. ;
Kaeaeb, Stefan ;
Spooner, Peter M. ;
Meitinger, Thomas ;
Chakravarti, Aravinda .
NATURE GENETICS, 2006, 38 (06) :644-651
[2]   Genome-Wide Association Study Identifies GPC5 as a Novel Genetic Locus Protective against Sudden Cardiac Arrest [J].
Arking, Dan E. ;
Reinier, Kyndaron ;
Post, Wendy ;
Jui, Jonathan ;
Hilton, Gina ;
O'Connor, Ashley ;
Prineas, Ronald J. ;
Boerwinkle, Eric ;
Psaty, Bruce M. ;
Tomaselli, Gordon F. ;
Rea, Thomas ;
Sotoodehnia, Nona ;
Siscovick, David S. ;
Burke, Gregory L. ;
Marban, Eduardo ;
Spooner, Peter M. ;
Chakravarti, Aravinda ;
Chugh, Sumeet S. .
PLOS ONE, 2010, 5 (03)
[3]   Caveolae, ion channels and cardiac arrhythmias [J].
Balijepalli, Ravi C. ;
Kamp, Timothy J. .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2008, 98 (2-3) :149-160
[4]   TagSNP evaluation for the association of 42 inflammation loci and vascular disease:: evidence of IL6, FGB, ALOX5, NFKBIA, and IL4R loci effects [J].
Carlson, Christopher S. ;
Heagerty, Patrick J. ;
Nord, Alex S. ;
Pritchard, David K. ;
Ranchalis, Jane ;
Boguch, Joshua M. ;
Duan, Hangjun ;
Hatsukami, Thomas S. ;
Schwartz, Stephen M. ;
Rieder, Mark J. ;
Nickerson, Deborah A. ;
Jarvik, Gail P. .
HUMAN GENETICS, 2007, 121 (01) :65-75
[5]   CAPON modulates cardiac repolarization via neuronal nitric oxide synthase signaling in the heart [J].
Chang, Kuan-Cheng ;
Barth, Andreas S. ;
Sasano, Tetsuo ;
Kizana, Eddy ;
Kashiwakura, Yuji ;
Zhang, Yiqiang ;
Foster, D. Brian ;
Marban, Eduardo .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (11) :4477-4482
[6]   PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes [J].
Conde, Lucia ;
Vaquerizas, Juan M. ;
Dopazo, Hernan ;
Arbiza, Leonardo ;
Reumers, Joke ;
Rousseau, Frederic ;
Schymkowitz, Joost ;
Dopazo, Joaquin .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W621-W625
[7]   Familial sudden death is an important risk factor for primary ventricular fibrillation - A case-control study in acute myocardial infarction patients [J].
Dekker, Lukas R. C. ;
Bezzina, Connie R. ;
Henriques, Jose P. S. ;
Tanck, Michael W. ;
Koch, Karel T. ;
Alings, Marco W. ;
Arnold, Alfred E. R. ;
de Boer, Menko-Jan ;
Gorgels, Anton P. M. ;
Michels, H. Rolf ;
Verkerk, Agnes ;
Verheugt, Freek W. A. ;
Zijlstra, Felix ;
Wilde, Arthur A. M. .
CIRCULATION, 2006, 114 (11) :1140-1145
[8]   AMBULATORY SUDDEN CARDIAC DEATH - MECHANISMS OF PRODUCTION OF FATAL ARRHYTHMIA ON THE BASIS OF DATA FROM 157 CASES [J].
DELUNA, AB ;
COUMEL, P ;
LECLERCQ, JF .
AMERICAN HEART JOURNAL, 1989, 117 (01) :151-159
[9]   Genomic control, a new approach to genetic-based association studies [J].
Devlin, B ;
Roeder, K ;
Wasserman, L .
THEORETICAL POPULATION BIOLOGY, 2001, 60 (03) :155-166
[10]   Identification of a common variant at the NOS1AP locus strongly associated to QT-interval duration [J].
Eijgelsheim, Mark ;
Aarnoudse, Adrianus L. H. J. ;
Rivadeneira, Fernando ;
Kors, Jan A. ;
Witteman, Jacqueline C. M. ;
Hofman, Albert ;
van Duijn, Cornelia M. ;
Uitterlinden, Andre G. ;
Stricker, Bruno H. C. .
HUMAN MOLECULAR GENETICS, 2009, 18 (02) :347-357