Rethinking the marine carbon cycle: Factoring in the multifarious lifestyles of microbes

被引：615

作者：

Worden, Alexandra Z. ^{[1
,2
,3
]}

Follows, Michael J. ^{[4
]}

Giovannoni, Stephen J. ^{[5
]}

Wilken, Susanne ^{[1
]}

Zimmerman, Amy E. ^{[1
]}

Keeling, Patrick J. ^{[3
,6
]}

机构：

[1] Monterey Bay Aquarium Res Inst, Moss Landing, CA 95039 USA

[2] Univ Calif Santa Cruz, Dept Ocean Sci, Santa Cruz, CA 95064 USA

[3] Canadian Inst Adv Res, Integrated Microbial Biodivers Program, Toronto, ON M5G 1Z8, Canada

[4] MIT, Dept Earth Atmospher & Planetary Sci, Cambridge, MA 02139 USA

[5] Oregon State Univ, Dept Microbiol, Corvallis, OR 97331 USA

[6] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada

来源：

SCIENCE | 2015年 / 347卷 / 6223期

关键词：

OPEN-OCEAN; FOOD-WEB; WIDESPREAD OCCURRENCE; BIOLOGICAL PROCESSES; NITROGEN-FIXATION; GRAZING IMPACT; CLIMATE-CHANGE; BACTERIAL; DIVERSITY; DYNAMICS;

D O I：

10.1126/science.1257594

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The profound influence of marine plankton on the global carbon cycle has been recognized for decades, particularly for photosynthetic microbes that form the base of ocean food chains. However, a comprehensive model of the carbon cycle is challenged by unicellular eukaryotes (protists) having evolved complex behavioral strategies and organismal interactions that extend far beyond photosynthetic lifestyles. As is also true for multicellular eukaryotes, these strategies and their associated physiological changes are difficult to deduce from genome sequences or gene repertoires-a problem compounded by numerous unknown function proteins. Here, we explore protistan trophic modes in marine food webs and broader biogeochemical influences. We also evaluate approaches that could resolve their activities, link them to biotic and abiotic factors, and integrate them into an ecosystems biology framework.

引用

页数：11

共 159 条

[71] Phylogenetic diversity and specificity of bacteria closely associated with Alexandrium spp. and other phytoplankton [J].

Jasti, S ;

Sieracki, ME ;

Poulton, NJ ;

Giewat, MW ;

Rooney-Varga, JN .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2005, 71 (07) :3483-3494

[72] Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation [J].

Karl, David M. ;

Church, Matthew J. ;

Dore, John E. ;

Letelier, Ricardo M. ;

Mahaffey, Claire .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (06) :1842-1849

[73] The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing [J].

Keeling, Patrick J. ;

Burki, Fabien ;

Wilcox, Heather M. ;

Allam, Bassem ;

Allen, Eric E. ;

Amaral-Zettler, Linda A. ;

Armbrust, E. Virginia ;

Archibald, John M. ;

Bharti, Arvind K. ;

Bell, Callum J. ;

Beszteri, Bank ;

Bidle, Kay D. ;

Cameron, Connor T. ;

Campbell, Lisa ;

Caron, David A. ;

Cattolico, Rose Ann ;

Collier, Jackie L. ;

Coyne, Kathryn ;

Davy, Simon K. ;

Deschamps, Phillipe ;

Dyhrman, Sonya T. ;

Edvardsen, Bente ;

Gates, Ruth D. ;

Gobler, Christopher J. ;

Greenwood, Spencer J. ;

Guida, Stephanie M. ;

Jacobi, Jennifer L. ;

Jakobsen, Kjetill S. ;

James, Erick R. ;

Jenkins, Bethany ;

John, Uwe ;

Johnson, Matthew D. ;

Juhl, Andrew R. ;

Kamp, Anja ;

Katz, Laura A. ;

Kiene, Ronald ;

Kudryavtsev, Alexander ;

Leander, Brian S. ;

Lin, Senjie ;

Lovejoy, Connie ;

Lynn, Denis ;

Marchetti, Adrian ;

McManus, George ;

Nedelcu, Aurora M. ;

Menden-Deuer, Susanne ;

Miceli, Cristina ;

Mock, Thomas ;

Montresor, Marina ;

Moran, Mary Ann ;

Murray, Shauna .

PLOS BIOLOGY, 2014, 12 (06)

[74]

Keeling PJ, 2013, ENV MICROBIOL REP, V5, P5, DOI DOI 10.1111/1758-2229.12021

[75] Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life [J].

Kim, Eunsoo ;

Harrison, James W. ;

Sudek, Sebastian ;

Jones, Meredith D. M. ;

Wilcox, Heather M. ;

Richards, Thomas A. ;

Worden, Alexandra Z. ;

Archibald, John M. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (04) :1496-1500

[76] The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans [J].

King, Nicole ;

Westbrook, M. Jody ;

Young, Susan L. ;

Kuo, Alan ;

Abedin, Monika ;

Chapman, Jarrod ;

Fairclough, Stephen ;

Hellsten, Uffe ;

Isogai, Yoh ;

Letunic, Ivica ;

Marr, Michael ;

Pincus, David ;

Putnam, Nicholas ;

Rokas, Antonis ;

Wright, Kevin J. ;

Zuzow, Richard ;

Dirks, William ;

Good, Matthew ;

Goodstein, David ;

Lemons, Derek ;

Li, Wanqing ;

Lyons, Jessica B. ;

Morris, Andrea ;

Nichols, Scott ;

Richter, Daniel J. ;

Salamov, Asaf ;

Bork, Peer ;

Lim, Wendell A. ;

Manning, Gerard ;

Miller, W. Todd ;

McGinnis, William ;

Shapiro, Harris ;

Tjian, Robert ;

Grigoriev, Igor V. ;

Rokhsar, Daniel .

NATURE, 2008, 451 (7180) :783-788

[77] Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use [J].

Kleiner, Manuel ;

Wentrup, Cecilia ;

Lott, Christian ;

Teeling, Hanno ;

Wetzel, Silke ;

Young, Jacque ;

Chang, Yun-Juan ;

Shah, Manesh ;

VerBerkmoes, Nathan C. ;

Zarzycki, Jan ;

Fuchs, Georg ;

Markert, Stephanie ;

Hempel, Kristina ;

Voigt, Birgit ;

Becher, Doerte ;

Liebeke, Manuel ;

Lalk, Michael ;

Albrecht, Dirk ;

Hecker, Michael ;

Schweder, Thomas ;

Dubilier, Nicole .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (19) :E1173-E1182

[78] CHROMULINA-PUSILLA BUTCHER, A DOMINANT MEMBER OF THE ULTRAPLANKTON [J].

KNIGHTJONES, EW ;

WALNE, PR .

NATURE, 1951, 167 (4246) :445-446

[79] Optofluidic Cell Selection from Complex Microbial Communities for Single-Genome Analysis [J].

Landry, Zachary C. ;

Giovanonni, Stephen J. ;

Quake, Stephen R. ;

Blainey, Paul C. .

MICROBIAL METAGENOMICS, METATRANSCRIPTOMICS, AND METAPROTEOMICS, 2013, 531 :61-90

[80] Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models [J].

Le Quéré, C ;

Harrison, SP ;

Prentice, IC ;

Buitenhuis, ET ;

Aumont, O ;

Bopp, L ;

Claustre, H ;

Da Cunha, LC ;

Geider, R ;

Giraud, X ;

Klaas, C ;

Kohfeld, KE ;

Legendre, L ;

Manizza, M ;

Platt, T ;

Rivkin, RB ;

Sathyendranath, S ;

Uitz, J ;

Watson, AJ ;

Wolf-Gladrow, D .

GLOBAL CHANGE BIOLOGY, 2005, 11 (11) :2016-2040

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