Dynamics and energetics of hydrophobically confined water

被引:15
作者
Bauer, Brad A. [1 ]
Ou, Shuching [2 ]
Patel, Sandeep [2 ]
Siva, Karthik [3 ]
机构
[1] Coll St Rose, Dept Phys & Biol Sci, Albany, NY 12203 USA
[2] Univ Delaware, Dept Chem & Biochem, Newark, DE 19716 USA
[3] Wilmington Charter High Sch, Wilmington, DE 19807 USA
来源
PHYSICAL REVIEW E | 2012年 / 85卷 / 05期
基金
美国国家卫生研究院;
关键词
MOLECULAR-DYNAMICS; CARBON NANOTUBES; FREE-ENERGY; LIQUID; SIMULATIONS; TRANSITION; SOLVATION; ENTROPY; FORCE; ICE;
D O I
10.1103/PhysRevE.85.051506
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
The effects of water confined in regions between self-assembling entities is relevant to numerous contexts such as macromolecular association, protein folding, protein-ligand association, and nanomaterials self-assembly. Thus assessing the impact of confined water, and the ability of current modeling techniques to capture the salient features of confined water is important and timely. We present molecular dynamics simulation results investigating the effect of confined water on qualitative features of potentials of mean force describing the free energetics of self-assembly of large planar hydrophobic plates. We consider several common explicit water models including the TIP3P, TIP4P, SPC/E, TIP4P-FQ, and SWM4-NDP, the latter two being polarizable models. Examination of the free energies for filling and unfilling the volume confined between the two plates (both in the context of average number of confined water molecules and "depth" of occupancy) suggests TIP4P-FQ water molecules generally occupy the confined volume at separation distances larger than observed for other models under the same conditions. The connection between this tendency of TIP4P-FQ water and the lack of a pronounced barrier in the potential of mean force for plate-plate association in TIP4P-FQ water is explored by artificially, but systematically, populating the confined volume with TIP4P-FQ water at low plate-plate separation distances. When the critical separation distance [denoting the crossover from an unoccupied (dry) confined interior to a filled (wet) interior] for TIP4P-FQ is reduced by 0.5 angstrom using this approach, a barrier is observed; we rationalize this effect based on increased resistant forces introduced by confined water molecules at these low separations. We also consider the dynamics of water molecules in the confined region between the hydrophobes. We find that the TIP4P-FQ water model exhibits nonbulklike dynamics, with enhanced lateral diffusion relative to bulk. This is consistent with the reduced intermolecular water-water interaction indicated by a decreased molecular dipole moment in the interplate region. Analysis of velocity autocorrelation functions and associated power spectra indicate that the interplate region for TIP4P-FQ at a plate separation of 14.4 angstrom approaches characteristics of the pure water liquid-vapor interface. This is in stark contrast to the other water models (including the polarizable SWM4-NDP model).
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页数:14
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  • [1] SOLVENT CAGE EFFECTS AND THE DYNAMICS OF LIQUID-STATE CHEMICAL-REACTIONS
    ADELMAN, SA
    [J]. REVIEWS OF CHEMICAL INTERMEDIATES, 1987, 8 (04): : 321 - 338
  • [2] Analysis of the velocity autocorrelation function of water
    Balucani, U
    Brodholt, JP
    Vallauri, R
    [J]. JOURNAL OF PHYSICS-CONDENSED MATTER, 1996, 8 (34) : 6139 - 6144
  • [3] Role of spatial ionic distribution on the energetics of hydrophobic assembly and properties of the water/hydrophobe interface
    Bauer, Brad A.
    Ou, Shuching
    Patel, Sandeep
    [J]. PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012, 14 (06) : 1892 - 1906
  • [4] Role of Electrostatics in Modulating Hydrophobic Interactions and Barriers to Hydrophobic Assembly
    Bauer, Brad A.
    Patel, Sandeep
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (24) : 8107 - 8117
  • [5] THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS
    BERENDSEN, HJC
    GRIGERA, JR
    STRAATSMA, TP
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) : 6269 - 6271
  • [6] CHARMM: The Biomolecular Simulation Program
    Brooks, B. R.
    Brooks, C. L., III
    Mackerell, A. D., Jr.
    Nilsson, L.
    Petrella, R. J.
    Roux, B.
    Won, Y.
    Archontis, G.
    Bartels, C.
    Boresch, S.
    Caflisch, A.
    Caves, L.
    Cui, Q.
    Dinner, A. R.
    Feig, M.
    Fischer, S.
    Gao, J.
    Hodoscek, M.
    Im, W.
    Kuczera, K.
    Lazaridis, T.
    Ma, J.
    Ovchinnikov, V.
    Paci, E.
    Pastor, R. W.
    Post, C. B.
    Pu, J. Z.
    Schaefer, M.
    Tidor, B.
    Venable, R. M.
    Woodcock, H. L.
    Wu, X.
    Yang, W.
    York, D. M.
    Karplus, M.
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) : 1545 - 1614
  • [7] The role of primitive relaxation in the dynamics of aqueous mixtures, nano-confined water and hydrated proteins
    Capaccioli, S.
    Ngai, K. L.
    Ancherbak, S.
    Rolla, P. A.
    Shinyashiki, N.
    [J]. JOURNAL OF NON-CRYSTALLINE SOLIDS, 2011, 357 (02) : 641 - 654
  • [8] Protein folding mediated by solvation:: Water expulsion and formation of the hydrophobic core occur after the structural collapse
    Cheung, MS
    García, AE
    Onuchic, JN
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (02) : 685 - 690
  • [9] Dynamics of water trapped between hydrophobic solutes
    Choudhury, N
    Pettitt, BM
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (13) : 6422 - 6429
  • [10] Dynamics of water at the nanoscale hydrophobic confinement
    Choudhury, Niharendu
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2010, 132 (06)