共 8 条
The complete chloroplast genome of Citrus medica (Rutaceae)
被引:2
作者:

Zhang, Fuquan
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h-index: 0
机构:
Nanjing Forestry Univ, Sch Informat Sci & Technol, Nanjing, Jiangsu, Peoples R China Nanjing Forestry Univ, Sch Informat Sci & Technol, Nanjing, Jiangsu, Peoples R China

Bai, Di
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h-index: 0
机构:
Nanjing Agr Univ, Coll Engn, Nanjing 210095, Jiangsu, Peoples R China Nanjing Forestry Univ, Sch Informat Sci & Technol, Nanjing, Jiangsu, Peoples R China
机构:
[1] Nanjing Forestry Univ, Sch Informat Sci & Technol, Nanjing, Jiangsu, Peoples R China
[2] Nanjing Agr Univ, Coll Engn, Nanjing 210095, Jiangsu, Peoples R China
来源:
MITOCHONDRIAL DNA PART B-RESOURCES
|
2020年
/
5卷
/
02期
关键词:
Rutaceae;
Citrus medica;
chloroplast genome;
phylogenetic analysis;
ORIGIN;
D O I:
10.1080/23802359.2020.1745108
中图分类号:
Q3 [遗传学];
学科分类号:
071007 ;
090102 ;
摘要:
Citrus medica (C. medica), belonging to the family Rutaceae, possibly originated in north-east India and is now cultivated in subtropical and tropical regions. In this study, the assembled cp genome of C. medica exhibited a typical quadripartite cycle of 160,031 bp, composing of a pair of inverted repeats (IRs, 26,991 bp each) separated by a large single-copy (LSC, 87,476 bp) region and a small single copy (SSC, 18,573 bp) region. A total of 134 genes were annotated in this cp genome. Phylogenetic analysis showed that C. medica was closely related to Citrus limon (C. limon) and Citrus sinensis (C. sinensis).
引用
收藏
页码:1627 / 1629
页数:3
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[1]
Assessing genetic diversity and population structure in a citrus germplasm collection utilizing simple sequence repeat markers (SSRs)
[J].
Barkley, Noelle A.
;
Roose, Mikeal L.
;
Krueger, Robert R.
;
Federici, Claire T.
.
THEORETICAL AND APPLIED GENETICS,
2006, 112 (08)
:1519-1531

Barkley, Noelle A.
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Natl Clonal Germplasm Repository Citrus & Dates, Riverside, CA 92507 USA

Roose, Mikeal L.
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Natl Clonal Germplasm Repository Citrus & Dates, Riverside, CA 92507 USA

Krueger, Robert R.
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Natl Clonal Germplasm Repository Citrus & Dates, Riverside, CA 92507 USA

Federici, Claire T.
论文数: 0 引用数: 0
h-index: 0
机构: USDA ARS, Natl Clonal Germplasm Repository Citrus & Dates, Riverside, CA 92507 USA
[2]
The relationships among lemons, limes and citron: a chromosomal comparison
[J].
Carvalho, R
;
Soares, WS
;
Brasileiro-Vidal, AC
;
Guerra, M
.
CYTOGENETIC AND GENOME RESEARCH,
2005, 109 (1-3)
:276-282

Carvalho, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Fed Pernambuco, Ctr Ciencias Biol, Dept Bot, BR-50670420 Recife, PE, Brazil

Soares, WS
论文数: 0 引用数: 0
h-index: 0
机构: Univ Fed Pernambuco, Ctr Ciencias Biol, Dept Bot, BR-50670420 Recife, PE, Brazil

Brasileiro-Vidal, AC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Fed Pernambuco, Ctr Ciencias Biol, Dept Bot, BR-50670420 Recife, PE, Brazil

Guerra, M
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Fed Pernambuco, Ctr Ciencias Biol, Dept Bot, BR-50670420 Recife, PE, Brazil Univ Fed Pernambuco, Ctr Ciencias Biol, Dept Bot, BR-50670420 Recife, PE, Brazil
[3]
fastp: an ultra-fast all-in-one FASTQ preprocessor
[J].
Chen, Shifu
;
Zhou, Yanqing
;
Chen, Yaru
;
Gu, Jia
.
BIOINFORMATICS,
2018, 34 (17)
:884-890

Chen, Shifu
论文数: 0 引用数: 0
h-index: 0
机构:
HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China
Chinese Acad Sci, Shenzhen Inst Adv Technol, Shenzhen 518055, Peoples R China HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China

Zhou, Yanqing
论文数: 0 引用数: 0
h-index: 0
机构:
HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China

Chen, Yaru
论文数: 0 引用数: 0
h-index: 0
机构:
HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China

Gu, Jia
论文数: 0 引用数: 0
h-index: 0
机构:
Chinese Acad Sci, Shenzhen Inst Adv Technol, Shenzhen 518055, Peoples R China HaploX Biotechnol, Dept Bioinformat, Shenzhen 518057, Peoples R China
[4]
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
[J].
Dierckxsens, Nicolas
;
Mardulyn, Patrick
;
Smits, Guillaume
.
NUCLEIC ACIDS RESEARCH,
2017, 45 (04)

Dierckxsens, Nicolas
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium
Vrije Univ Brussel, Triomflaan CP 263, B-1050 Brussels, Belgium Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium

Mardulyn, Patrick
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium
Vrije Univ Brussel, Triomflaan CP 263, B-1050 Brussels, Belgium
Univ Libre Bruxelles, Fac Sci, Evolutionary Biol & Ecol Unit, CP 160-12,Av FD Roosevelt 50, B-1050 Brussels, Belgium Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium

Smits, Guillaume
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium
Vrije Univ Brussel, Triomflaan CP 263, B-1050 Brussels, Belgium
Univ Libre Bruxelles, Hop Univ Enfants Reine Fabiola, Genet, Brussels, Belgium
Univ Libre Bruxelles, Ctr Med Genet, Hop Erasme, Route Lennik 808, B-1070 Brussels, Belgium Univ Libre Bruxelles, Interuniv Inst Bioinformat Brussels, Triomflaan CP 263, B-1050 Brussels, Belgium
[5]
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
[J].
Kumar, Sudhir
;
Stecher, Glen
;
Li, Michael
;
Knyaz, Christina
;
Tamura, Koichiro
.
MOLECULAR BIOLOGY AND EVOLUTION,
2018, 35 (06)
:1547-1549

Kumar, Sudhir
论文数: 0 引用数: 0
h-index: 0
机构:
Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA
Temple Univ, Dept Biol, Philadelphia, PA 19122 USA
King Abdulaziz Univ, Ctr Excellence Genome Med & Res, Jeddah, Saudi Arabia Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA

Stecher, Glen
论文数: 0 引用数: 0
h-index: 0
机构:
Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA

Li, Michael
论文数: 0 引用数: 0
h-index: 0
机构:
Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA

Knyaz, Christina
论文数: 0 引用数: 0
h-index: 0
机构:
Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA Temple Univ, Inst Genom & Evolutionary Med, Philadelphia, PA 19122 USA

论文数: 引用数:
h-index:
机构:
[6]
Citrus phylogeny and genetic origin of important species as investigated by molecular markers
[J].
Nicolosi, E
;
Deng, ZN
;
Gentile, A
;
La Malfa, S
;
Continella, G
;
Tribulato, E
.
THEORETICAL AND APPLIED GENETICS,
2000, 100 (08)
:1155-1166

论文数: 引用数:
h-index:
机构:

Deng, ZN
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:

Continella, G
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy

Tribulato, E
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy Univ Catania, Ist Coltivaz Arboree, I-95123 Catania, Italy
[7]
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes
[J].
Qu, Xiao-Jian
;
Moore, Michael J.
;
Li, De-Zhu
;
Yi, Ting-Shuang
.
PLANT METHODS,
2019, 15 (1)

Qu, Xiao-Jian
论文数: 0 引用数: 0
h-index: 0
机构:
Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China
Shandong Normal Univ, Coll Life Sci, Inst Biomed Sci, Shandong Prov Key Lab Anim Resistance Biol, Jinan, Shandong, Peoples R China Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China

Moore, Michael J.
论文数: 0 引用数: 0
h-index: 0
机构:
Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China

Li, De-Zhu
论文数: 0 引用数: 0
h-index: 0
机构:
Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China

Yi, Ting-Shuang
论文数: 0 引用数: 0
h-index: 0
机构:
Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, 132 Lanhei Rd, Kunming 650204, Yunnan, Peoples R China
[8]
Genomics of the origin and evolution of Citrus
[J].
Wu, Guohong Albert
;
Terol, Javier
;
Ibanez, Victoria
;
Lopez-Garcia, Antonio
;
Perez-Roman, Estela
;
Borreda, Carles
;
Domingo, Concha
;
Tadeo, Francisco R. .
;
Carbonell-Caballero, Jose
;
Alonso, Roberto
;
Curk, Franck
;
Du, Dongliang
;
Ollitrault, Patrick
;
Roose, Mikeal L.
;
Dopazo, Joaquin
;
Gmitter, Frederick G., Jr.
;
Rokhsar, Daniel S.
;
Talon, Manuel
.
NATURE,
2018, 554 (7692)
:311-+

Wu, Guohong Albert
论文数: 0 引用数: 0
h-index: 0
机构:
US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Terol, Javier
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Ibanez, Victoria
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Lopez-Garcia, Antonio
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Perez-Roman, Estela
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Borreda, Carles
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Domingo, Concha
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Tadeo, Francisco R. .
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Carbonell-Caballero, Jose
论文数: 0 引用数: 0
h-index: 0
机构:
CIPF, Computat Genom Dept, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Alonso, Roberto
论文数: 0 引用数: 0
h-index: 0
机构:
CIPF, Computat Genom Dept, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Curk, Franck
论文数: 0 引用数: 0
h-index: 0
机构:
INRA, AGAP Res Unit, San Giuliano, France US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Du, Dongliang
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Florida, CREC, IFAS, Lake Alfred, FL USA US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Ollitrault, Patrick
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Cooperat Int Rech Agron Dev CIRAD, AGAP Res Unit, Petit Bourg, Guadeloupe, France US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Roose, Mikeal L.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Riverside, Dept Bot & Plant Sci, Riverside, CA 92521 USA US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Dopazo, Joaquin
论文数: 0 引用数: 0
h-index: 0
机构:
CIPF, Computat Genom Dept, Valencia, Spain
Spanish Natl Inst Bioinformat ELIXIR Es CIPF, Funct Genom Node, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Gmitter, Frederick G., Jr.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Florida, CREC, IFAS, Lake Alfred, FL USA US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Rokhsar, Daniel S.
论文数: 0 引用数: 0
h-index: 0
机构:
US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA
Univ Calif Berkeley, Dept Mol & Cell Biol, 229 Stanley Hall, Berkeley, CA 94720 USA
Univ Calif Berkeley, Ctr Integrat Genom, Berkeley, CA 94720 USA
Grad Univ, Okinawa Inst Sci & Technol, Mol Genet Unit, Okinawa 9040495, Japan US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

Talon, Manuel
论文数: 0 引用数: 0
h-index: 0
机构:
IVIA, Ctr Genom, Valencia, Spain US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA