A machine learning model to estimate myocardial stiffness from EDPVR

被引:22
作者
Babaei, Hamed [1 ]
Mendiola, Emilio A. [1 ]
Neelakantan, Sunder [1 ]
Xiang, Qian [2 ]
Vang, Alexander [3 ]
Dixon, Richard A. F. [2 ]
Shah, Dipan J. [4 ]
Vanderslice, Peter [2 ]
Choudhary, Gaurav [3 ,5 ]
Avazmohammadi, Reza [1 ,6 ,7 ]
机构
[1] Texas A&M Univ, Dept Biomed Engn, College Stn, TX 77843 USA
[2] Texas Heart Inst, Dept Mol Cardiol, Houston, TX 77030 USA
[3] Providence VA Med Ctr, Providence, RI 02908 USA
[4] Houston Methodist DeBakey Heart & Vasc Ctr, Houston, TX 77030 USA
[5] Brown Univ, Dept Med, Alpert Med Sch, Providence, RI 02903 USA
[6] Texas A&M Univ, J Mike Walker 66 Dept Mech Engn, College Stn, TX 77843 USA
[7] Houston Methodist Acad Inst, Dept Cardiovasc Sci, Houston, TX 77030 USA
关键词
PARAMETER-ESTIMATION; CONSTITUTIVE PARAMETERS; DIASTOLIC PROPERTIES; FIBER ORIENTATION; FINITE-ELEMENT;
D O I
10.1038/s41598-022-09128-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In-vivo estimation of mechanical properties of the myocardium is essential for patient-specific diagnosis and prognosis of cardiac disease involving myocardial remodeling, including myocardial infarction and heart failure with preserved ejection fraction. Current approaches use time-consuming finite-element (FE) inverse methods that involve reconstructing and meshing the heart geometry, imposing measured loading, and conducting computationally expensive iterative FE simulations. In this paper, we propose a machine learning (ML) model that feasibly and accurately predicts passive myocardial properties directly from select geometric, architectural, and hemodynamic measures, thus bypassing exhaustive steps commonly required in cardiac FE inverse problems. Geometric and fiber-orientation features were chosen to be readily obtainable from standard cardiac imaging protocols. The end-diastolic pressure-volume relationship (EDPVR), which can be obtained using a single-point pressure-volume measurement, was used as a hemodynamic (loading) feature. A comprehensive ML training dataset in the geometry-architecture-loading space was generated, including a wide variety of partially synthesized rodent heart geometry and myofiber helicity possibilities, and a broad range of EDPVRs obtained using forward FE simulations. Latin hypercube sampling was used to create 2500 examples for training, validation, and testing. A multi-layer feed-forward neural network (MFNN) was used as a deep learning agent to train the ML model. The model showed excellent performance in predicting stiffness parameters a(f) and b(f) associated with fiber direction (R-af(2) = 99.471% and R-b(f)2 = 92.837%). After conducting permutation feature importance analysis, the ML performance further improved for b(f) (R-bf(2) = 96.240%), and the left ventricular volume and endocardial area were found to be the most critical geometric features for accurate predictions. The ML model predictions were evaluated further in two cases: (i) rat-specific stiffness data measured using ex-vivo mechanical testing, and (ii) patient-specific estimation using FE inverse modeling. Excellent agreements with ML predictions were found for both cases. The trained ML model offers a feasible technology to estimate patient-specific myocardial properties, thus, bridging the gap between EDPVR, as a confounded organ-level metric for tissue stiffness, and intrinsic tissue-level properties. These properties provide incremental information relative to traditional organ-level indices for cardiac function, improving the clinical assessment and prognosis of cardiac diseases.
引用
收藏
页数:17
相关论文
共 54 条
[1]  
[Anonymous], 2021, IEEE Trans. Broadcast.
[2]  
Augenstein KF, 2006, LECT NOTES COMPUT SC, V4190, P628
[3]   A Computational Cardiac Model for the Adaptation to Pulmonary Arterial Hypertension in the Rat [J].
Avazmohammadi, Reza ;
Mendiola, Emilio A. ;
Soares, Joao S. ;
Li, David S. ;
Chen, Zhiqiang ;
Merchant, Samer ;
Hsu, Edward W. ;
Vanderslice, Peter ;
Dixon, Richard A. F. ;
Sacks, Michael S. .
ANNALS OF BIOMEDICAL ENGINEERING, 2019, 47 (01) :138-153
[4]   An integrated inverse model-experimental approach to determine soft tissue three-dimensional constitutive parameters: application to post-infarcted myocardium [J].
Avazmohammadi, Reza ;
Li, David S. ;
Leahy, Thomas ;
Shih, Elizabeth ;
Soares, Joo S. ;
Gorman, Joseph H. ;
Gorman, Robert C. ;
Sacks, Michael S. .
BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 2018, 17 (01) :31-53
[5]   A novel constitutive model for passive right ventricular myocardium: evidence for myofiber-collagen fiber mechanical coupling [J].
Avazmohammadi, Reza ;
Hill, Michael R. ;
Simon, Marc A. ;
Zhang, Will ;
Sacks, Michael S. .
BIOMECHANICS AND MODELING IN MECHANOBIOLOGY, 2017, 16 (02) :561-581
[6]   The Living Heart Project: A robust and integrative simulator for human heart function [J].
Baillargeon, Brian ;
Rebelo, Nuno ;
Fox, David D. ;
Taylor, Robert L. ;
Kuhl, Ellen .
EUROPEAN JOURNAL OF MECHANICS A-SOLIDS, 2014, 48 :38-47
[7]   A Novel Rule-Based Algorithm for Assigning Myocardial Fiber Orientation to Computational Heart Models [J].
Bayer, J. D. ;
Blake, R. C. ;
Plank, G. ;
Trayanova, N. A. .
ANNALS OF BIOMEDICAL ENGINEERING, 2012, 40 (10) :2243-2254
[8]   Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium [J].
Cai, Li ;
Ren, Lei ;
Wang, Yongheng ;
Xie, Wenxian ;
Zhu, Guangyu ;
Gao, Hao .
ROYAL SOCIETY OPEN SCIENCE, 2021, 8 (01)
[9]   NONLINEAR-SYSTEM IDENTIFICATION USING NEURAL NETWORKS [J].
CHEN, S ;
BILLINGS, SA ;
GRANT, PM .
INTERNATIONAL JOURNAL OF CONTROL, 1990, 51 (06) :1191-1214
[10]   Neural Feature Search: A Neural Architecture for Automated Feature Engineering [J].
Chen, Xiangning ;
Lin, Qingwei ;
Luo, Chuan ;
Li, Xudong ;
Zhang, Hongyu ;
Xu, Yong ;
Dang, Yingnong ;
Sui, Kaixin ;
Zhang, Xu ;
Qiao, Bo ;
Zhang, Weiyi ;
Wu, Wei ;
Chintalapati, Murali ;
Zhang, Dongmei .
2019 19TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING (ICDM 2019), 2019, :71-80