AnyWave: A cross-platform and modular software for visualizing and processing electrophysiological signals

被引:102
作者
Colombet, B. [1 ,2 ]
Woodman, M. [1 ,2 ]
Badier, J. M. [1 ,2 ]
Benar, C. G. [1 ,2 ]
机构
[1] INSERM, UMR1106, Marseille, France
[2] Aix Marseille Univ, Inst Neurosci Syst, Marseille, France
关键词
Multi-platform software; Signal processing; Electrophysiology; MATLAB; !text type='Python']Python[!/text; EEG; MEG;
D O I
10.1016/j.jneumeth.2015.01.017
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: The importance of digital signal processing in clinical neurophysiology is growing steadily, involving clinical researchers and methodologists. There is a need for crossing the gap between these communities by providing efficient delivery of newly designed algorithms to end users. We have developed such a tool which both visualizes and processes data and, additionally, acts as a software development platform. New method: AnyWave was designed to run on all common operating systems. It provides access to a variety of data formats and it employs high fidelity visualization techniques. It also allows using external tools as plug-ins, which can be developed in languages including C++, MATLAB and Python. Results: In the current version, plug-ins allow computation of connectivity graphs (non-linear correlation h2) and time-frequency representation (Morlet wavelets). The software is freely available under the LGPL3 license. Comparison with existing methods: AnyWave is designed as an open, highly extensible solution, with an architecture that permits rapid delivery of new techniques to end users. Conclusions: We have developed AnyWave software as an efficient neurophysiological data visualizer able to integrate state of the art techniques. AnyWave offers an interface well suited to the needs of clinical research and an architecture designed for integrating new tools. We expect this software to strengthen the collaboration between clinical neurophysiologists and researchers in biomedical engineering and signal processing. (C) 2015 Elsevier B.V. All rights reserved.
引用
收藏
页码:118 / 126
页数:9
相关论文
共 14 条
  • [1] ELAN: A Software Package for Analysis and Visualization of MEG, EEG, and LFP Signals
    Aguera, Pierre-Emmanuel
    Jerbi, Karim
    Caclin, Anne
    Bertrand, Olivier
    [J]. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2011, 2011
  • [2] Electromagnetic brain mapping
    Baillet, S
    Mosher, JC
    Leahy, RM
    [J]. IEEE SIGNAL PROCESSING MAGAZINE, 2001, 18 (06) : 14 - 30
  • [3] Consensus Matching Pursuit for multi-trial EEG signals
    Benar, Christian G.
    Papadopoulo, Theodore
    Torresani, Bruno
    Clerc, Maureen
    [J]. JOURNAL OF NEUROSCIENCE METHODS, 2009, 180 (01) : 161 - 170
  • [4] Spatiotemporal Analysis of Multichannel EEG: CARTOOL
    Brunet, Denis
    Murray, Micah M.
    Michel, Christoph M.
    [J]. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2011, 2011
  • [5] EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis
    Delorme, A
    Makeig, S
    [J]. JOURNAL OF NEUROSCIENCE METHODS, 2004, 134 (01) : 9 - 21
  • [6] Garcia Samuel, 2009, Front Neuroinform, V3, P14, DOI 10.3389/neuro.11.014.2009
  • [7] MEG and EEG data analysis with MNE-Python']Python
    Gramfort, Alexandre
    Luessi, Martin
    Larson, Eric
    Engemann, Denis A.
    Strohmeier, Daniel
    Brodbeck, Christian
    Goj, Roman
    Jas, Mainak
    Brooks, Teon
    Parkkonen, Lauri
    Haemaelaeinen, Matti
    [J]. FRONTIERS IN NEUROSCIENCE, 2013, 7
  • [8] OpenMEEG: opensource software for quasistatic bioelectromagnetics
    Gramfort, Alexandre
    Papadopoulo, Theodore
    Olivi, Emmanuel
    Clerc, Maureen
    [J]. BIOMEDICAL ENGINEERING ONLINE, 2010, 9
  • [9] EEG and MEG Data Analysis in SPM8
    Litvak, Vladimir
    Mattout, Jeremie
    Kiebel, Stefan
    Phillips, Christophe
    Henson, Richard
    Kilner, James
    Barnes, Gareth
    Oostenveld, Robert
    Daunizeau, Jean
    Flandin, Guillaume
    Penny, Will
    Friston, Karl
    [J]. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2011, 2011
  • [10] FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data
    Oostenveld, Robert
    Fries, Pascal
    Maris, Eric
    Schoffelen, Jan-Mathijs
    [J]. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE, 2011, 2011