Global optimization on funneling landscapes

被引:161
作者
Leary, RH [1 ]
机构
[1] Univ Calif San Diego, San Diego Supercomp Ctr, San Diego, CA 92186 USA
基金
美国国家科学基金会;
关键词
Global optimization; Lennard-Jones clusters; Basin-hopping; Energy landscape; Folding funnel; Molecular conformation;
D O I
10.1023/A:1026500301312
中图分类号
C93 [管理学]; O22 [运筹学];
学科分类号
070105 ; 12 ; 1201 ; 1202 ; 120202 ;
摘要
Molecular conformation problems arising in computational chemistry require the global minimization of a non-convex potential energy function representing the interactions of, for example, the component atoms in a molecular system. Typically the number of local minima on the potential energy surface grows exponentially with system size, and often becomes enormous even for relatively modestly sized systems. Thus the simple multistart strategy of randomly sampling local minima becomes impractical. However, for many molecular conformation potential energy surfaces the local minima can be organized by a simple adjacency relation into a single or at most a small number of funnels. A distinguished local minimum lies at the bottom of each funnel and a monotonically descending sequence of adjacent local minima connects every local minimum in the funnel with the funnel bottom. Thus the global minimum can be found among the comparatively small number of funnel bottoms, and a multistart strategy based on sampling funnel bottoms becomes viable. In this paper we present such an algorithm of the basin-hopping type and apply it to the Lennard-Jones cluster problem, an intensely studied molecular conformation problem which has become a benchmark for global optimization algorithms. Results of numerical experiments are presented which confirm both the multifunneling character of the Lennard-Jones potential surface as well as the efficiency of the algorithm. The algorithm has found all of the current putative global minima in the literature up to 110 atoms, as well as discovered a new global minimum for the 98-atom cluster of a novel geometrical class.
引用
收藏
页码:367 / 383
页数:17
相关论文
共 30 条
[1]   Archimedean polyhedron structure yields a lower energy atomic cluster [J].
Barron, C ;
Gomez, S ;
Romero, D .
APPLIED MATHEMATICS LETTERS, 1996, 9 (05) :75-78
[2]   TOPOGRAPHY AND DYNAMICS OF MULTIDIMENSIONAL INTERATOMIC POTENTIAL SURFACES [J].
BERRY, RS ;
BREITENGRASERKUNZ, R .
PHYSICAL REVIEW LETTERS, 1995, 74 (20) :3951-3954
[3]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[4]  
Deaven DM, 1996, CHEM PHYS LETT, V256, P195, DOI 10.1016/0009-2614(96)00406-X
[5]   THE EFFECT OF THE RANGE OF THE POTENTIAL ON THE STRUCTURES OF CLUSTERS [J].
DOYE, JPK ;
WALES, DJ ;
BERRY, RS .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (10) :4234-4249
[6]   Evolution of the potential energy surface with size for Lennard-Jones clusters [J].
Doye, JPK ;
Miller, MA ;
Wales, DJ .
JOURNAL OF CHEMICAL PHYSICS, 1999, 111 (18) :8417-8428
[7]   The double-funnel energy landscape of the 38-atom Lennard-Jones cluster [J].
Doye, JPK ;
Miller, MA ;
Wales, DJ .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (14) :6896-6906
[8]   PHYSICAL CLUSTER MECHANICS - STATICS AND ENERGY SURFACES FOR MONATOMIC SYSTEMS [J].
HOARE, MR ;
PAL, P .
ADVANCES IN PHYSICS, 1971, 20 (84) :161-&
[9]   PERFORMANCE OF THE DIFFUSION EQUATION METHOD IN SEARCHES FOR OPTIMUM STRUCTURES OF CLUSTERS OF LENNARD-JONES ATOMS [J].
KOSTROWICKI, J ;
PIELA, L ;
CHERAYIL, BJ ;
SCHERAGA, HA .
JOURNAL OF PHYSICAL CHEMISTRY, 1991, 95 (10) :4113-4119
[10]   Global optima of Lennard-Jones clusters [J].
Leary, RH .
JOURNAL OF GLOBAL OPTIMIZATION, 1997, 11 (01) :35-53