How to predict very large and complex crystal structures

被引:160
作者
Lyakhov, Andriy O. [1 ,2 ,3 ]
Oganov, Artem R. [1 ,2 ,3 ,4 ]
Valle, Mario [5 ,6 ]
机构
[1] SUNY Stony Brook, Dept Geosci, Stony Brook, NY 11794 USA
[2] SUNY Stony Brook, Dept Phys & Astron, Stony Brook, NY 11794 USA
[3] SUNY Stony Brook, New York Ctr Computat Sci, Stony Brook, NY 11794 USA
[4] Moscow MV Lomonosov State Univ, Dept Geol, Moscow 119992, Russia
[5] Swiss Natl Supercomp Ctr CSCS, Data Anal Serv, CH-6928 Manno, Switzerland
[6] Swiss Natl Supercomp Ctr CSCS, Visualizat Serv, CH-6928 Manno, Switzerland
基金
美国国家科学基金会;
关键词
Crystal structure prediction; Evolutionary algorithms; Genetic algorithms; Global optimization; Fingerprint function; Genetic drift; Order parameter; GLOBAL OPTIMIZATION; MINIMA; POTENTIALS; ALGORITHMS; CLUSTERS; METALS; SIZE;
D O I
10.1016/j.cpc.2010.06.007
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Evolutionary crystal structure prediction proved to be a powerful approach in discovering new materials. Certain limitations are encountered for systems with a large number of degrees of freedom ("large systems") and complex energy landscapes ("complex systems"). We explore the nature of these limitations and address them with a number of newly developed tools. For large systems a major problem is the lack of diversity: any randomly produced population consists predominantly of high-energy disordered structures, offering virtually no routes toward the ordered ground state. We offer two solutions: first, modified variation operators that favor atoms with higher local order (a function we introduce here), and, second, construction of the first generation non-randomly, using pseudo-subcells with, in general, fractional atomic occupancies. This enhances order and diversity and improves energies of the structures. We introduce an additional variation operator, coordinate mutation, which applies preferentially to low-order ("badly placed") atoms. Biasing other variation operators by local order is also found to produce improved results. One promising version of coordinate mutation, explored here, displaces atoms along the eigenvector of the lowest-frequency vibrational mode. For complex energy landscapes, the key problem is the possible existence of several energy funnels - in this situation it is possible to get trapped in one funnel (not necessarily containing the ground state). To address this problem, we develop an algorithm incorporating the ideas of abstract "distance" between structures. These new ingredients improve the performance of the evolutionary algorithm USPEX, in terms of efficiency and reliability, for large and complex systems. Published by Elsevier B.V.
引用
收藏
页码:1623 / 1632
页数:10
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