Crystallographic insights into a cobalt (III) sepulchrate based alternative cofactor system of P450 BM3 monooxygenase

被引:3
作者
Panneerselvam, Saravanan [1 ]
Shehzad, Aamir [2 ,3 ]
Mueller-Dieckmann, Jochen [4 ]
Wilmanns, Matthias [5 ]
Bocola, Marco [2 ]
Davari, Mehdi D. [2 ]
Schwaneberg, Ulrich [2 ,6 ]
机构
[1] DESY, HASYLAB, Notkestr 85, D-22603 Hamburg, Germany
[2] Rhein Westfal TH Aachen, Lehrstuhl Biotechnol, Worringerweg 3, D-52074 Aachen, Germany
[3] Kohat Univ Sci & Technol, Dept Biotechnol & Genet Engn, Kohat, Khyber Pakhtunk, Pakistan
[4] Kottwitzstr 16, D-20253 Hamburg, Germany
[5] DESY, European Mol Biol Lab Hamburg, Hamburg, Germany
[6] DWI Leibniz Inst Interakt Mat, Forckenbeckstr 50, D-52056 Aachen, Germany
来源
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS | 2018年 / 1866卷 / 01期
关键词
Crystal structure; P450; monooxygenase; Alternative cofactor; Cobalt (III) sepulchrate; MEDIATED ELECTRON-TRANSFER; MOLECULAR-DYNAMICS SIMULATIONS; DRIVEN OMEGA-HYDROXYLATION; FATTY-ACID HYDROXYLASE; OXYGEN SENSING FILM; PROTEIN DATA-BANK; CYTOCHROME-P450; BM3; HEME DOMAIN; LABORATORY EVOLUTION; DRUG METABOLITES;
D O I
10.1016/j.bbapap.2017.07.010
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
P450 BM3 is a multi-domain heme-containing soluble bacterial monooxygenase. P450 BM3 and variants are known to oxidize structurally diverse substrates. Crystal structures of individual domains of P450 BM3 are available. However, the spatial organization of the full-length protein is unknown. In this study, crystal structures of the P450 BM3 M7 heme domain variant with and without cobalt (III) sepulchrate are reported. Cobalt (III) sepulchrate acts as an electron shuttle in an alternative cofactor system employing zinc dust as the electron source. The crystal structure shows a binding site for the mediator cobalt (III) sepulchrate at the entrance of the substrate access channel. The mediator occupies an unusual position which is far from the active site and distinct from the binding of the natural redox partner (FAD/NADPH binding domain).
引用
收藏
页码:134 / 140
页数:7
相关论文
共 102 条
[1]   Towards automated crystallographic structure refinement with phenix.refine [J].
Afonine, Pavel V. ;
Grosse-Kunstleve, Ralf W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Moriarty, Nigel W. ;
Mustyakimov, Marat ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Zwart, Peter H. ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :352-367
[2]   STRUCTURES OF 2 COBALT(III) SEPULCHRATE COMPLEXES [J].
BACCHI, A ;
FERRANTI, F ;
PELIZZI, G .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 1993, 49 :1163-1169
[3]   Electrochemical Detection of Anti-Breast-Cancer Agents in Human Serum by Cytochrome P450-Coated Carbon Nanotubes [J].
Baj-Rossi, Camilla ;
De Micheli, Giovanni ;
Carrara, Sandro .
SENSORS, 2012, 12 (05) :6520-6537
[4]   Electrostatics of nanosystems: Application to microtubules and the ribosome [J].
Baker, NA ;
Sept, D ;
Joseph, S ;
Holst, MJ ;
McCammon, JA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (18) :10037-10041
[5]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[6]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[7]   P450BM3 fused to phosphite dehydrogenase allows phosphite-driven selective oxidations [J].
Beyer, Nina ;
Kulig, Justyna K. ;
Bartsch, Anette ;
Hayes, Martin A. ;
Janssen, Dick B. ;
Fraaije, Marco W. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2017, 101 (06) :2319-2331
[8]   Application of CYP102A1M11H as a Tool for the Generation of Protein Adducts of Reactive Drug Metabolites [J].
Boerma, J. S. ;
Vermeulen, N. P. E. ;
Commandeur, J. N. M. .
CHEMICAL RESEARCH IN TOXICOLOGY, 2011, 24 (08) :1263-1274
[9]   Structure-Guided Directed Evolution of Highly Selective P450-Based Magnetic Resonance Imaging Sensors for Dopamine and Serotonin [J].
Brustad, Eric M. ;
Lelyveld, Victor S. ;
Snow, Christopher D. ;
Crook, Nathan ;
Jung, Sang Taek ;
Martinez, Francisco M. ;
Scholl, Timothy J. ;
Jasanoff, Alan ;
Arnold, Frances H. .
JOURNAL OF MOLECULAR BIOLOGY, 2012, 422 (02) :245-262
[10]   Structural Evidence: A Single Charged Residue Affects Substrate Binding in Cytochrome P450 BM-3 [J].
Catalano, Jaclyn ;
Sadre-Bazzaz, Kianoush ;
Amodeo, Gabriele A. ;
Tong, Liang ;
McDermott, Ann .
BIOCHEMISTRY, 2013, 52 (39) :6807-6815