共 70 条
LAIPT: Lysine Acetylation Site Identification with Polynomial Tree
被引:11
作者:

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China

Yang, Bin
论文数: 0 引用数: 0
h-index: 0
机构:
Zaozhuang Univ, Sch Informat Sci & Engn, Zaozhuang 277100, Peoples R China Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China

Li, Zhengwei
论文数: 0 引用数: 0
h-index: 0
机构:
China Univ Min & Technol, Sch Comp Sci & Technol, Xuzhou 221116, Jiangsu, Peoples R China Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China

Zhou, Yong
论文数: 0 引用数: 0
h-index: 0
机构:
China Univ Min & Technol, Sch Comp Sci & Technol, Xuzhou 221116, Jiangsu, Peoples R China Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China
机构:
[1] Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China
[2] Zaozhuang Univ, Sch Informat Sci & Engn, Zaozhuang 277100, Peoples R China
[3] China Univ Min & Technol, Sch Comp Sci & Technol, Xuzhou 221116, Jiangsu, Peoples R China
基金:
美国国家科学基金会;
关键词:
post-translational modification;
flexible neural tree;
polynomial feature forms;
PROTEIN-STRUCTURE CLASSES;
POSTTRANSLATIONAL MODIFICATION;
N-6-METHYLADENOSINE SITES;
CHROMATIN MODIFICATIONS;
PUPYLATION SITES;
PREDICTION;
RNA;
CLASSIFICATION;
METHYLATION;
MODES;
D O I:
10.3390/ijms20010113
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Post-translational modification plays a key role in the field of biology. Experimental identification methods are time-consuming and expensive. Therefore, computational methods to deal with such issues overcome these shortcomings and limitations. In this article, we propose a lysine acetylation site identification with polynomial tree method (LAIPT), making use of the polynomial style to demonstrate amino-acid residue relationships in peptide segments. This polynomial style was enriched by the physical and chemical properties of amino-acid residues. Then, these reconstructed features were input into the employed classification model, named the flexible neural tree. Finally, some effect evaluation measurements were employed to test the model's performance.
引用
收藏
页数:18
相关论文
共 70 条
[1]
Mutli-Features Prediction of Protein Translational Modification Sites
[J].
Bao, Wenzheng
;
Yuan, Chang-An
;
Zhang, Youhua
;
Han, Kyungsook
;
Nandi, Asoke K.
;
Honig, Barry
;
Huang, De-shuang
.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS,
2018, 15 (05)
:1453-1460

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

论文数: 引用数:
h-index:
机构:

Zhang, Youhua
论文数: 0 引用数: 0
h-index: 0
机构:
Anhui Agr Univ, Sch Informat & Comp, Changjiang West Rd 130, Hefei 230031, Anhui, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Han, Kyungsook
论文数: 0 引用数: 0
h-index: 0
机构:
Inha Univ, Sch Comp Sci & Engn, Incheon 22212, South Korea Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Nandi, Asoke K.
论文数: 0 引用数: 0
h-index: 0
机构:
Brunel Univ London, Dept Elect & Comp Engn, Uxbridge UB8 3PH, Middx, England Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Honig, Barry
论文数: 0 引用数: 0
h-index: 0
机构:
Ctr Computat Biol & Bioinformat, 1130 St Nicholas Ave,Room 815, New York, NY 10032 USA Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Huang, De-shuang
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China
[2]
CIPPN: computational identification of protein pupylation sites by using neural network
[J].
Bao, Wenzheng
;
You, Zhu-Hong
;
Huang, De-Shuang
.
ONCOTARGET,
2017, 8 (65)
:108867-108879

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Sch Elect & Informat Engn, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China

You, Zhu-Hong
论文数: 0 引用数: 0
h-index: 0
机构:
Chinese Acad Sci, Xinjiang Tech Inst Phys & Chem, Urumqi 830011, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China

Huang, De-Shuang
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Sch Elect & Informat Engn, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China
[3]
Novel human microbe-disease association prediction using network consistency projection
[J].
Bao, Wenzheng
;
Jiang, Zhichao
;
Huang, De-Shuang
.
BMC BIOINFORMATICS,
2017, 18

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Jiang, Zhichao
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China

Huang, De-Shuang
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Sch Elect & Informat Engn, Caoan Rd 4800, Shanghai 201804, Peoples R China
[4]
Classification of Protein Structure Classes on Flexible Neutral Tree
[J].
Bao, Wenzheng
;
Wang, Dong
;
Chen, Yuehui
.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS,
2017, 14 (05)
:1122-1133

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Sch Elect & Informat Engn, Shanghai 201804, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Shanghai 201804, Peoples R China

Wang, Dong
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Jinan, Jian 250022, Jiangxi, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Shanghai 201804, Peoples R China

Chen, Yuehui
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Jinan, Sch Informat Sci & Engn, Jinan 250022, Shandong, Peoples R China Tongji Univ, Sch Elect & Informat Engn, Shanghai 201804, Peoples R China
[5]
Pupylation sites prediction with ensemble classification model
[J].
Bao, Wenzheng
;
Huang, Zhenhua
;
Yuan, Chang-An
;
Huang, De-Shuang
.
INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS,
2017, 18 (02)
:91-104

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China

Huang, Zhenhua
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China

论文数: 引用数:
h-index:
机构:

Huang, De-Shuang
论文数: 0 引用数: 0
h-index: 0
机构:
Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China Tongji Univ, Inst Machine Learning & Syst Biol, Shanghai, Peoples R China
[6]
Prediction of protein structure classes with flexible neural tree
[J].
Bao, Wenzheng
;
Chen, Yuehui
;
Wang, Dong
.
BIO-MEDICAL MATERIALS AND ENGINEERING,
2014, 24 (06)
:3797-3806

Bao, Wenzheng
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China

Chen, Yuehui
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China

Wang, Dong
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China Univ Jinan, Sch Informat Sci & Engn, Jinan, Peoples R China
[7]
Post-translational modification of p53 in tumorigenesis
[J].
Bode, AM
;
Dong, ZG
.
NATURE REVIEWS CANCER,
2004, 4 (10)
:793-805

Bode, AM
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Hormel Inst, Austin, MN 55912 USA Univ Minnesota, Hormel Inst, Austin, MN 55912 USA

Dong, ZG
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Minnesota, Hormel Inst, Austin, MN 55912 USA Univ Minnesota, Hormel Inst, Austin, MN 55912 USA
[8]
propy: a tool to generate various modes of Chou's PseAAC
[J].
Cao, Dong-Sheng
;
Xu, Qing-Song
;
Liang, Yi-Zeng
.
BIOINFORMATICS,
2013, 29 (07)
:960-962

Cao, Dong-Sheng
论文数: 0 引用数: 0
h-index: 0
机构:
Cent S Univ, Res Ctr Modernizat Tradit Chinese Med, Changsha 410083, Hunan, Peoples R China Cent S Univ, Res Ctr Modernizat Tradit Chinese Med, Changsha 410083, Hunan, Peoples R China

Xu, Qing-Song
论文数: 0 引用数: 0
h-index: 0
机构:
Cent S Univ, Sch Math & Stat, Changsha 410083, Hunan, Peoples R China Cent S Univ, Res Ctr Modernizat Tradit Chinese Med, Changsha 410083, Hunan, Peoples R China

Liang, Yi-Zeng
论文数: 0 引用数: 0
h-index: 0
机构:
Cent S Univ, Res Ctr Modernizat Tradit Chinese Med, Changsha 410083, Hunan, Peoples R China Cent S Univ, Res Ctr Modernizat Tradit Chinese Med, Changsha 410083, Hunan, Peoples R China
[9]
iRNA-PseU: Identifying RNA pseudouridine sites
[J].
Chen, Wei
;
Tang, Hua
;
Ye, Jing
;
Lin, Hao
;
Chou, Kuo-Chen
.
MOLECULAR THERAPY-NUCLEIC ACIDS,
2016, 5
:e332

Chen, Wei
论文数: 0 引用数: 0
h-index: 0
机构:
North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China
North China Univ Sci & Technol, Ctr Genom & Computat Biol, Tangshan 063000, Peoples R China
Gordon Life Sci Inst, Boston, MA 02478 USA North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China

Tang, Hua
论文数: 0 引用数: 0
h-index: 0
机构:
Southwest Med Univ, Dept Pathophysiol, Luzhou, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China

Ye, Jing
论文数: 0 引用数: 0
h-index: 0
机构:
North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China
North China Univ Sci & Technol, Ctr Genom & Computat Biol, Tangshan 063000, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China

Lin, Hao
论文数: 0 引用数: 0
h-index: 0
机构:
Gordon Life Sci Inst, Boston, MA 02478 USA
Univ Elect Sci & Technol China, Sch Life Sci & Technol, Ctr Bioinformat, Key Lab Neuroinformat,Minist Educ, Chengdu, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China

Chou, Kuo-Chen
论文数: 0 引用数: 0
h-index: 0
机构:
Gordon Life Sci Inst, Boston, MA 02478 USA
King Abdulaziz Univ, CEGMR, Jeddah, Saudi Arabia North China Univ Sci & Technol, Sch Sci, Dept Phys, Tangshan 063000, Peoples R China
[10]
iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition
[J].
Chen, Wei
;
Feng, Pengmian
;
Ding, Hui
;
Lin, Hao
;
Chou, Kuo-Chen
.
ANALYTICAL BIOCHEMISTRY,
2015, 490
:26-33

Chen, Wei
论文数: 0 引用数: 0
h-index: 0
机构:
North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China
Gordon Life Sci Inst, Belmont, MA 02478 USA North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China

Feng, Pengmian
论文数: 0 引用数: 0
h-index: 0
机构:
North China Univ Sci & Technol, Sch Publ Hlth, Tangshan 063000, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China

Ding, Hui
论文数: 0 引用数: 0
h-index: 0
机构:
North China Univ Sci & Technol, Sch Publ Hlth, Tangshan 063000, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China

Lin, Hao
论文数: 0 引用数: 0
h-index: 0
机构:
Gordon Life Sci Inst, Belmont, MA 02478 USA
Univ Elect Sci & Technol China, Sch Life Sci & Technol, Ctr Bioinformat & Ctr Informat Biomed, Key Lab Neuroinformat Minist Educ, Chengdu 610054, Peoples R China North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China

Chou, Kuo-Chen
论文数: 0 引用数: 0
h-index: 0
机构:
Gordon Life Sci Inst, Belmont, MA 02478 USA
King Abdulaziz Univ, CEGMR, Jeddah 21589, Saudi Arabia North China Univ Sci & Technol, Sch Sci, Dept Phys, Ctr Genom & Computat Biol, Tangshan 063009, Peoples R China