LAIPT: Lysine Acetylation Site Identification with Polynomial Tree

被引:11
作者
Bao, Wenzheng [1 ]
Yang, Bin [2 ]
Li, Zhengwei [3 ]
Zhou, Yong [3 ]
机构
[1] Xuzhou Univ Technol, Sch Informat & Elect Engn, Xuzhou 221018, Jiangsu, Peoples R China
[2] Zaozhuang Univ, Sch Informat Sci & Engn, Zaozhuang 277100, Peoples R China
[3] China Univ Min & Technol, Sch Comp Sci & Technol, Xuzhou 221116, Jiangsu, Peoples R China
基金
美国国家科学基金会;
关键词
post-translational modification; flexible neural tree; polynomial feature forms; PROTEIN-STRUCTURE CLASSES; POSTTRANSLATIONAL MODIFICATION; N-6-METHYLADENOSINE SITES; CHROMATIN MODIFICATIONS; PUPYLATION SITES; PREDICTION; RNA; CLASSIFICATION; METHYLATION; MODES;
D O I
10.3390/ijms20010113
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Post-translational modification plays a key role in the field of biology. Experimental identification methods are time-consuming and expensive. Therefore, computational methods to deal with such issues overcome these shortcomings and limitations. In this article, we propose a lysine acetylation site identification with polynomial tree method (LAIPT), making use of the polynomial style to demonstrate amino-acid residue relationships in peptide segments. This polynomial style was enriched by the physical and chemical properties of amino-acid residues. Then, these reconstructed features were input into the employed classification model, named the flexible neural tree. Finally, some effect evaluation measurements were employed to test the model's performance.
引用
收藏
页数:18
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