Whole-Genome Identification of APX and CAT Gene Families in Cultivated and Wild Soybeans and Their Regulatory Function in Plant Development and Stress Response

被引:22
作者
Aleem, Muqadas [1 ,2 ]
Aleem, Saba [3 ]
Sharif, Iram [4 ]
Aleem, Maida [5 ]
Shahzad, Rahil [6 ]
Khan, Muhammad Imran [3 ]
Batool, Amina [3 ]
Sarwar, Gulam [4 ]
Farooq, Jehanzeb [4 ]
Iqbal, Azeem [1 ]
Jan, Basit Latief [7 ]
Kaushik, Prashant [8 ]
Feng, Xianzhong [9 ,10 ]
Bhat, Javaid Akhter [9 ,11 ]
Ahmad, Parvaiz [12 ,13 ]
机构
[1] Univ Agr Faisalabad, Dept Plant Breeding & Genet, Faisalabad 38040, Pakistan
[2] Univ Agr Faisalabad, Ctr Adv Studies Agr & Food Secur CAS AFS, Faisalabad 38040, Pakistan
[3] Barani Agr Res Stn, Fatehjang 43350, Pakistan
[4] Ayub Agr Res Inst, Cotton Res Stn, Faisalabad 38000, Pakistan
[5] Univ Agr Faisalabad, Dept Bot, Faisalabad 38040, Pakistan
[6] Ayub Agr Res Inst, Agr Biotechnol Res Inst, Faisalabad 38000, Pakistan
[7] King Saud Univ, Dept Clin Pharm, Coll Pharm, Riyadh 11451, Saudi Arabia
[8] Univ Politecn Valencia, Inst Conservac & Mejora Agrodiversidad Valenciana, E-46022 Valencia, Spain
[9] Zhejiang Lab, Hangzhou 311121, Peoples R China
[10] Chinese Acad Sci, Northeast Inst Geog & Agroecol, Key Lab Soybean Mol Design Breeding, Changchun 130012, Peoples R China
[11] Jiangsu Univ, Int Genome Ctr, Zhenjiang 212013, Jiangsu, Peoples R China
[12] King Saud Univ, Coll Sci, Bot & Microbiol Dept, Riyadh 11451 8, Saudi Arabia
[13] GDC, Dept Bot, Pulwama 192301, India
关键词
G; max; soja; ascorbate peroxidase; catalyze; legumes; ASCORBATE PEROXIDASE; TRANSCRIPTION FACTORS; EXPRESSION PATTERNS; LEAF SENESCENCE; CATALASE GENES; DROUGHT; PREDICTION; TOLERANCE; SELECTION; SEQUENCE;
D O I
10.3390/antiox11081626
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plants coevolved with their antioxidant defense systems, which detoxify and adjust levels of reactive oxygen species (ROS) under multiple plant stresses. We performed whole-genome identification of ascorbate peroxidase (APX) and catalase (CAT) families in cultivated and wild soybeans. In cultivated and wild soybean genomes, we identified 11 and 10 APX genes, respectively, whereas the numbers of identified CAT genes were four in each species. Comparative phylogenetic analysis revealed more homology among cultivated and wild soybeans relative to other legumes. Exon/intron structure, motif and synteny blocks are conserved in cultivated and wild species. According to the Ka/Ks value, purifying selection is a major force for evolution of these gene families in wild soybean; however, the APX gene family was evolved by both positive and purifying selection in cultivated soybean. Segmental duplication was a major factor involved in the expansion of APX and CAT genes. Expression patterns revealed that APX and CAT genes are differentially expressed across fourteen different soybean tissues under water deficit (WD), heat stress (HS) and combined drought plus heat stress (WD + HS). Altogether, the current study provides broad insights into these gene families in soybeans. Our results indicate that APX and CAT gene families modulate multiple stress response in soybeans.
引用
收藏
页数:26
相关论文
共 79 条
[51]   Genome-Wide Analysis of WRKY Genes and Their Response to Salt Stress in the Wild Progenitor of Asian Cultivated Rice, Oryza rufipogon [J].
Nan, Hong ;
Li, Wei ;
Lin, Yang-lei ;
Gao, Li-zhi .
FRONTIERS IN GENETICS, 2020, 11
[52]   Role of Catalase in Oxidative Stress- and Age-Associated Degenerative Diseases [J].
Nandi, Ankita ;
Yan, Liang-Jun ;
Jana, Chandan Kumar ;
Das, Nilanjana .
OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2019, 2019
[53]  
Nei M, 2005, Encyclopedia of Life Sciences
[54]   Spatial patterns of senescence and development-dependent distribution of reactive oxygen species in tobacco (Nicotiana tabacum) leaves [J].
Niewiadomska, Ewa ;
Polzien, Lisa ;
Desel, Christine ;
Rozpadek, Piotr ;
Miszalski, Zbigniew ;
Krupinska, Karin .
JOURNAL OF PLANT PHYSIOLOGY, 2009, 166 (10) :1057-1068
[55]   Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches [J].
Ozyigit, Ibrahim I. ;
Filiz, Ertugrul ;
Vatansever, Recep ;
Kurtoglu, Kuaybe Y. ;
Koc, Ibrahim ;
Ozturk, Munir X. ;
Anjum, Naser A. .
FRONTIERS IN PLANT SCIENCE, 2016, 7
[56]   Expression of the Apx gene family during leaf senescence of Arabidopsis thaliana [J].
Panchuk, II ;
Zentgraf, U ;
Volkov, RA .
PLANTA, 2005, 222 (05) :926-932
[57]   The ascorbate peroxidase regulated by H2O2 and ethylene is involved in cotton fiber cell elongation by modulating ROS homeostasis [J].
Qin, Yong-Mei ;
Hu, Chun-Yang ;
Zhu, Yu-Xian .
PLANT SIGNALING & BEHAVIOR, 2008, 3 (03) :194-196
[58]   Molecular Evolution of Maize Ascorbate Peroxidase Genes and Their Functional Divergence [J].
Qu, Chunxiang ;
Wang, Lin ;
Zhao, Yingwei ;
Liu, Chao .
GENES, 2020, 11 (10) :1-19
[59]   Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength-dependent gene expression, and define photoperiod as a crucial factor in the regulation of H2O2-induced cell death [J].
Queval, Guillaume ;
Issakidis-Bourguet, Emmanuelle ;
Hoeberichts, Frank A. ;
Vandorpe, Michaeel ;
Gakiere, Bertrand ;
Vanacker, Helene ;
Miginiac-Maslow, Myroslawa ;
Van Breusegem, Frank ;
Noctor, Graham .
PLANT JOURNAL, 2007, 52 (04) :640-657
[60]   RETRACTED: Characterization of Vascular plant One-Zinc finger (VOZ) in soybean (Glycine max and Glycine soja) and their expression analyses under drought condition (Retracted Article) [J].
Rehman, Shoaib Ur ;
Qanmber, Ghulam ;
Tahir, Muhammad Hammad Nadeem ;
Irshad, Ahsan ;
Fiaz, Sajid ;
Ahmad, Furqan ;
Ali, Zulfiqar ;
Sajjad, Muhammad ;
Shees, Muhammad ;
Usman, Muhammad ;
Geng, Zhide .
PLOS ONE, 2021, 16 (07)