A miRNA expression signature that separates between normal and malignant prostate tissues

被引:39
作者
Carlsson, Jessica [1 ,2 ,5 ]
Davidsson, Sabina [4 ,5 ]
Helenius, Gisela [3 ]
Karlsson, Mats [3 ]
Lubovac, Zelmina [2 ]
Andren, Ove [4 ]
Olsson, Bjorn [2 ]
Klinga-Levan, Karin [1 ]
机构
[1] Univ Skovde, Sch Life Sci, Syst Biol Res Ctr Tumor Biol, Skovde, Sweden
[2] Univ Skovde, Sch Life Sci, Syst Biol Res Ctr Bioinformat, Skovde, Sweden
[3] Orebro Univ Hosp, Dept Lab Med, Orebro, Sweden
[4] Orebro Univ Hosp, Dept Urol, Orebro, Sweden
[5] Univ Orebro, Sch Hlth & Med Sci, Orebro, Sweden
关键词
MICRORNA EXPRESSION; SMALL RNAS; GENE; IDENTIFICATION; PROFILES; TARGETS; DEREGULATION; MIR-26A; ENCODES; MARKERS;
D O I
10.1186/1475-2867-11-14
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Background: MicroRNAs (miRNAs) constitute a class of small non-coding RNAs that post-transcriptionally regulate genes involved in several key biological processes and thus are involved in various diseases, including cancer. In this study we aimed to identify a miRNA expression signature that could be used to separate between normal and malignant prostate tissues. Results: Nine miRNAs were found to be differentially expressed (p < 0.00001). With the exception of two samples, this expression signature could be used to separate between the normal and malignant tissues. A cross-validation procedure confirmed the generality of this expression signature. We also identified 16 miRNAs that possibly could be used as a complement to current methods for grading of prostate tumor tissues. Conclusions: We found an expression signature based on nine differentially expressed miRNAs that with high accuracy (85%) could classify the normal and malignant prostate tissues in patients from the Swedish Watchful Waiting cohort. The results show that there are significant differences in miRNA expression between normal and malignant prostate tissue, indicating that these small RNA molecules might be important in the biogenesis of prostate cancer and potentially useful for clinical diagnosis of the disease.
引用
收藏
页数:10
相关论文
共 48 条
[1]   Genomic profiling of MicroRNA and messenger RNA reveals deregulated MicroRNA expression in prostate cancer [J].
Ambs, Stefan ;
Prueitt, Robyn L. ;
Yi, Ming ;
Hudson, Robert S. ;
Howe, Tiffany M. ;
Petrocca, Fabio ;
Wallace, Tiffany A. ;
Liu, Chang-Gong ;
Volinia, Stefano ;
Calin, George A. ;
Yfantis, Harris G. ;
Stephens, Robert M. ;
Croce, Carlo M. .
CANCER RESEARCH, 2008, 68 (15) :6162-6170
[2]  
[Anonymous], YALE J BIOL MED
[3]   Identification of human microRNA targets from isolated argonaute protein complexes [J].
Beitzinger, Michaela ;
Peters, Lasse ;
Zhu, Jia Yun ;
Kremmer, Elisabeth ;
Meister, Gunter .
RNA BIOLOGY, 2007, 4 (02) :76-84
[4]   MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype [J].
Blenkiron, Cherie ;
Goldstein, Leonard D. ;
Thorne, Natalie P. ;
Spiteri, Inmaculada ;
Chin, Suet-Feung ;
Dunning, Mark J. ;
Barbosa-Morais, Nuno L. ;
Teschendorff, Andrew E. ;
Green, Andrew R. ;
Ellis, Ian O. ;
Tavare, Simon ;
Caldas, Carlos ;
Miska, Eric A. .
GENOME BIOLOGY, 2007, 8 (10)
[5]   MicroRNA expression patterns to differentiate pancreatic adenocarcinoma from normal pancreas and chronic pancreatitis [J].
Bloomston, Mark ;
Frankel, Wendy L. ;
Petrocca, Fabio ;
Volinia, Stefano ;
Alder, Hansjuerg ;
Hagan, John P. ;
Liu, Chang-Gong ;
Bhatt, Darshna ;
Taccioli, Cristian ;
Croce, Carlo M. .
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2007, 297 (17) :1901-1908
[6]   bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila [J].
Brennecke, J ;
Hipfner, DR ;
Stark, A ;
Russell, RB ;
Cohen, SM .
CELL, 2003, 113 (01) :25-36
[7]   PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order [J].
Caraux, G ;
Pinloche, S .
BIOINFORMATICS, 2005, 21 (07) :1280-1281
[8]   MicroRNAs modulate hematopoietic lineage differentiation [J].
Chen, CZ ;
Li, L ;
Lodish, HF ;
Bartel, DP .
SCIENCE, 2004, 303 (5654) :83-86
[9]  
De Angelis Gabriela, 2007, Rev Urol, V9, P113
[10]  
FUKUDA Y, 2005, NUCL ACIDS S SER, V49, P341