Photochemical etiology of promising ancestors of the RNA nucleobases

被引:19
作者
Brister, M. M.
Pollum, M.
Crespo-Hernandez, C. E. [1 ]
机构
[1] Case Western Reserve Univ, Dept Chem, Cleveland, OH 44106 USA
基金
美国国家科学基金会;
关键词
EXCITED-STATE DYNAMICS; ULTRAFAST INTERNAL-CONVERSION; ELECTRONIC GROUND-STATE; AQUEOUS-SOLUTION; TRIPLET-STATE; BASE-PAIR; HYPOXANTHINE; ORIGIN; ACIDS; 1-CYCLOHEXYLURACIL;
D O I
10.1039/c6cp00639f
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
RNA is a product of chemical and biological evolution and the identification of its heterocyclic ancestors is essential for understanding the molecular origins of life. Among a diverse array of selection pressures thought to have shaped the composition of the nucleobases on prebiotic Earth, protection against intense ultraviolet radiation must have been essential. In this contribution, a detailed spectroscopic and photophysical investigation of barbituric acid and 2,4,6-triaminopyrimidine, two promising candidates for the prebiotic ancestors of RNA nucleobases, is presented in aqueous solution. It is shown that although these pyrimidine derivatives absorb ultraviolet radiation strongly, both compounds possess efficient electronic relaxation mechanisms for dissipating most of the absorbed ultraviolet energy to their aqueous environment as heat within hundreds of femtoseconds, thus safeguarding their chemical integrity. In fact, these two heterocyclic compounds rival the photostability observed in the canonical nucleobases in aqueous solution, thus supporting the recent proposal that both barbituric acid and 2,4,6-triaminopyrimidine are promising ancestors of the RNA nucleobases.
引用
收藏
页码:20097 / 20103
页数:7
相关论文
共 33 条
[1]   Photochemical selectivity in guanine-cytosine base-pair structures [J].
Abo-Riziq, A ;
Grace, L ;
Nir, E ;
Kabelac, M ;
Hobza, P ;
de Vries, MS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (01) :20-23
[2]  
Andrzej L. S., 2006, Europhysics News, V37, P20, DOI 10.1051/epn:2006405
[3]   THERMODYNAMICS OF DISSOCIATION OF SOME BARBITURIC ACIDS IN AQUEOUS SOLUTION [J].
BRIGGS, AG ;
SAWBRIDG.JE ;
TICKLE, P ;
WILSON, JM .
JOURNAL OF THE CHEMICAL SOCIETY B-PHYSICAL ORGANIC, 1969, (07) :802-&
[4]   Direct Observation of Triplet-State Population Dynamics in the RNA Uracil Derivative 1-Cyclohexyluracil [J].
Brister, Matthew M. ;
Crespo-Hernandez, Carlos E. .
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2015, 6 (21) :4404-4409
[5]   Was a Pyrimidine-Pyrimidine Base Pair the Ancestor of Watson-Crick Base Pairs? Insights from a Systematic Approach to the Origin of RNA [J].
Cafferty, Brian J. ;
Hud, Nicholas V. .
ISRAEL JOURNAL OF CHEMISTRY, 2015, 55 (08) :891-905
[6]   Abiotic synthesis of RNA in water: a common goal of prebiotic chemistry and bottom-up synthetic biology [J].
Cafferty, Brian J. ;
Hud, Nicholas V. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2014, 22 :146-157
[7]   IR-UV double resonance spectroscopy of xanthine [J].
Callahan, Michael P. ;
Crews, Bridgit ;
Abo-Riziq, Ali ;
Grace, Louis ;
de Vries, Mattanjah S. ;
Gengeliczki, Zsolt ;
Holmes, Tiffani M. ;
Hill, Glake A. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2007, 9 (32) :4587-4591
[8]   Ultrafast nonradiative decay by hypoxanthine and several methylxanthines in aqueous and acetonitrile solution [J].
Chen, Jinquan ;
Kohler, Bern .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012, 14 (30) :10677-10682
[9]   Electronic and Structural Elements That Regulate the Excited-State Dynamics in Purine Nucleobase Derivatives [J].
Crespo-Hernandez, Carlos E. ;
Martinez-Fernandez, Lara ;
Rauer, Clemens ;
Reichardt, Christian ;
Mai, Sebastian ;
Pollum, Marvin ;
Marquetand, Philipp ;
Gonzalez, Leticia ;
Corral, Ines .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (13) :4368-4381
[10]   Ultrafast excited-state dynamics in nucleic acids [J].
Crespo-Hernández, CE ;
Cohen, B ;
Hare, PM ;
Kohler, B .
CHEMICAL REVIEWS, 2004, 104 (04) :1977-2019