BiosFlow - A Bioinformatics Workflow Platform based on Semantic Web Technology

被引:0
作者
Xu, Qing-Wei [1 ]
Huang, Yu [2 ]
机构
[1] HUBEI Univ Educ, Comp Sci & Technol, Wuhan, Peoples R China
[2] Hua Zhong Agr Univ, Comp Sci & Tehcnol, Wuhan, Peoples R China
来源
2009 INTERNATIONAL CONFERENCE ON FUTURE BIOMEDICAL INFORMATION ENGINEERING (FBIE 2009) | 2009年
关键词
Workflow; Semantic Web; Bioinformatics; MANAGEMENT; FRAMEWORK; ENACTMENT; ONTOLOGY; TOOL; OBO;
D O I
10.1109/FBIE.2009.5405845
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
to facilitate biologist's research, workflow technology provides a generic mechanism to integrate diverse types of resources, such as databases, software and services, which facilitate knowledge exchange within different divergent fields. In this paper, we developed a workflow-based platform for integrating bioinformatics applications and tools, namely Bios Flow. Bios Flow is a Semantic Web platform, which provides nucleotide, protein and multiple neural spike train data analysis.
引用
收藏
页码:37 / +
页数:3
相关论文
共 19 条
[1]   BioWMS: a web-based workflow management system for bioinformatics [J].
Bartocci, Ezio ;
Corradini, Flavio ;
Merelli, Emanuela ;
Scortichini, Lorenzo .
BMC BIOINFORMATICS, 2007, 8
[2]  
BERTHOLD M, 2007, STUDIES CLA IN PRESS
[3]   Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator [J].
Castro, AG ;
Thoraval, S ;
Garcia, LJ ;
Ragan, MA .
BMC BIOINFORMATICS, 2005, 6 (1)
[4]   OBO-Edit - an ontology editor for biologists [J].
Day-Richter, John ;
Harris, Midori A. ;
Haendel, Melissa .
BIOINFORMATICS, 2007, 23 (16) :2198-2200
[5]   ChEBI:: a database and ontology for chemical entities of biological interest [J].
Degtyarenko, Kirill ;
de Matos, Paula ;
Ennis, Marcus ;
Hastings, Janna ;
Zbinden, Martin ;
McNaught, Alan ;
Alcantara, Rafael ;
Darsow, Michael ;
Guedj, Mickael ;
Ashburner, Michael .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D344-D350
[6]   Biopipe: A flexible framework for protocol-based bioinformatics analysis [J].
Hoon, S ;
Ratnapu, KK ;
Chia, J ;
Kumarasamy, B ;
Xiao, JG ;
Clamp, M ;
Stabenau, A ;
Potter, S ;
Clarke, L ;
Stupka, E .
GENOME RESEARCH, 2003, 13 (08) :1904-1915
[7]   Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences [J].
Lee, Sung ;
Wang, Taowei David ;
Hashmi, Nada ;
Cummings, Michael P. .
FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE, 2007, 23 (03) :497-509
[8]   KDE bioscience: Platform for bioinformatics analysis workflows [J].
Lu, Qiang ;
Hao, Pei ;
Curcin, Vasa ;
He, Weizhong ;
Li, Yuan-Yuan ;
Luo, Qing-Ming ;
Guo, Yi-Ke ;
Li, Yi-Xue .
JOURNAL OF BIOMEDICAL INFORMATICS, 2006, 39 (04) :440-450
[9]   Scientific workflow management and the Kepler system [J].
Ludascher, Bertram ;
Altintas, Ilkay ;
Berkley, Chad ;
Higgins, Dan ;
Jaeger, Efrat ;
Jones, Matthew ;
Lee, Edward A. ;
Tao, Jing ;
Zhao, Yang .
CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 2006, 18 (10) :1039-1065
[10]   OBO to OWL: a protege OWL tab to read/save OBO ontologies [J].
Moreira, Dilvan A. ;
Musen, Mark A. .
BIOINFORMATICS, 2007, 23 (14) :1868-1870