Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

被引:22
作者
Jagodnik, Kathleen M. [1 ]
Koplev, Simon [1 ]
Jenkins, Sherry L. [1 ]
Ohno-Machado, Lucila [2 ,3 ]
Paten, Benedict [4 ]
Schurer, Stephan C. [5 ]
Dumontier, Michel [6 ]
Verborgh, Ruben [7 ]
Bui, Alex [8 ,9 ]
Ping, Peipei [10 ,11 ,12 ]
McKenna, Neil J. [13 ]
Madduri, Ravi [14 ]
Pillai, Ajay [15 ]
Ma'ayan, Avi [1 ]
机构
[1] Icahn Sch Med Mt Sinai, Dept Pharmacol Sci, LINCS Data Coordinat & Integrat Ctr BD2K, Mt Sinai Ctr Bioinformat, One Gustave L Levy Pl,Box 1215, New York, NY 10029 USA
[2] Univ Calif San Diego, Hlth Syst Dept Biomed Informat, 9500 Gilman Dr, La Jolla, CA 92083 USA
[3] San Diego Vet Adm Hlth Syst, Hlth Serv Res, San Diego, CA 92083 USA
[4] Univ Calif Santa Cruz, UC Santa Cruz Genom Inst, 1156 High St, Santa Cruz, CA 95060 USA
[5] Univ Miami, Dept Mol & Cellular Pharmacol, 331461120 NW 14th St,CRB 650,M-857, Miami, FL 33136 USA
[6] Univ Maastricht, Inst Data Sci, Minderbroedersberg 4-6, NL-6211 LK Maastricht, Netherlands
[7] Univ Ghent, iMinds Res Fdn Flanders, St Pietersnieuwstr 33, B-9000 Ghent, Belgium
[8] UCLA, Dept Radiol Sci, Sch Med, Los Angeles, CA 90095 USA
[9] UCLA, Dept Bioengn, Henri Samueli Sch Engn, Los Angeles, CA 90095 USA
[10] UCLA, Sch Med, Dept Physiol, Los Angeles, CA 90095 USA
[11] UCLA, Sch Med, Dept Med, Los Angeles, CA 90095 USA
[12] UCLA, Sch Med, Dept Bioinformat, Los Angeles, CA 90095 USA
[13] Baylor Coll Med, Dept Mol & Cellular Biol, 1 Baylor Plaza, Houston, TX 77030 USA
[14] Argonne Natl Lab, Dept Math & Comp Sci, 9700 S Cass Ave, Argonne, IL 60439 USA
[15] NHGRI, Div Genome Sci, NIH, 31 Ctr Dr,MSC 2152,9000 Rockville Pike, Bethesda, MD 20892 USA
关键词
Accessibility; Big Data; FAIR principles; Findability; Interoperability; Reusability; BIOINFORMATICS DATABASES; USABILITY; GENOMICS; DESIGN;
D O I
10.1016/j.jbi.2017.05.006
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The volume and diversity of data in biomedical research have been rapidly increasing in recent years. While such data hold significant promise for accelerating discovery, their use entails many challenges including: the need for adequate computational infrastructure, secure processes for data sharing and access, tools that allow researchers to find and integrate diverse datasets, and standardized methods of analysis. These are just some elements of a complex ecosystem that needs to be built to support the rapid accumulation of these data. The NIH Big Data to Knowledge (BD2K) initiative aims to facilitate digitally enabled biomedical research. Within the BD2K framework, the Commons initiative is intended to establish a virtual environment that will facilitate the use, interoperability, and discoverability of shared digital objects used for research. The BD2K Commons Framework Pilots Working Group (CFPWG) was established to clarify goals and work on pilot projects that address existing gaps toward realizing the vision of the BD2K Commons. This report reviews highlights from a two-day meeting involving the BD2K CFPWG to provide insights on trends and considerations in advancing Big Data science for biomedical research in the United States. (C) 2017 Elsevier Inc. All rights reserved.
引用
收藏
页码:49 / 57
页数:9
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