Microarray Expression Profile of Circular RNAs in Peripheral Blood Mononuclear Cells from Rheumatoid Arthritis Patients

被引:142
作者
Ouyang, Qingqing [1 ]
Wu, Jing [1 ]
Jiang, Zhenlan [1 ]
Zhao, Jinjun [1 ]
Wang, Ran [1 ]
Lou, Aiju [1 ]
Zhu, Dingji [1 ]
Shi, Guo-Ping [2 ,3 ]
Yang, Min [1 ]
机构
[1] Southern Med Univ, Nanfang Hosp, Dept Rheumatol & Immunol, Guangzhou 510510, Guangdong, Peoples R China
[2] Brigham & Womens Hosp, Dept Med, Boston, MA USA
[3] Harvard Med Sch, Boston, MA USA
关键词
Rheumatoid arthritis; Circular RNAs; Microarray assay; BIOMARKER; REVEALS; TISSUE; PREECLAMPSIA; ABUNDANT; CIRCRNA;
D O I
10.1159/000477883
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Background/Aims: Circular RNAs (circRNAs) compose a large class of RNAs that can be used as biomarkers in clinical blood samples. This study aimed to determine the expression of circRNAs in peripheral blood mononuclear cells (PBMCs) from rheumatoid arthritis (RA) patients to identify novel biomarkers for RA screening. Methods: We started with a microarray screening of circRNA changes in PBMCs from 5 RA patients and 5 healthy controls. We then confirmed the selected circRNA changes in PBMCs from 30 RA patients and 25 age-and sex-matched controls using the real-time quantitative reverse transcription-polymerase chain reaction (qRT-PCR). Spearman correlation test was performed to assess the correlation of circRNAs and clinical variables. Receiver operating characteristic (ROC) curve was calculated to evaluate the diagnostic value. Results: We identified and verified five circRNAs (092516, 003524, 103047, 104871, 101873) that were significantly elevated in PBMCs from RA patients. Among these RA patients, we detected no significant correlation between the five circRNAs and the disease severity, including disease activity score (DAS28), erythrocyte sedimentation rate (ESR), C-reactive protein (CRP), and health assessment questionnaire (HAQ). Yet, ROC curve analysis suggested that circRNA_104871 has significant value of RA diagnosis (AUC= 0.833, P< 0.001), followed by circRNA_003524 (AUC = 0.683, P = 0.020), circRNA_101873 (AUC = 0.676, P = 0.026), and circRNA_103047 (AUC = 0.671, P = 0.030). Conclusions: This study suggests that increased expression of circRNAs circRNA_104871, circRNA_003524, circRNA_101873 and circRNA_103047 in PBMC from RA patients may serve as potential biomarkers for RA patient diagnosis. (C) 2017 The Author(s) Published by S. Karger AG, Basel
引用
收藏
页码:651 / 659
页数:9
相关论文
共 24 条
[1]  
Aletaha D, 2010, ANN RHEUM DIS, V69, P1580, DOI [10.1136/ard.2010.138461, 10.1002/art.27584]
[2]   CIRCULAR TRANSCRIPTS OF THE TESTIS-DETERMINING GENE SRY IN ADULT-MOUSE TESTIS [J].
CAPEL, B ;
SWAIN, A ;
NICOLIS, S ;
HACKER, A ;
WALTER, M ;
KOOPMAN, P ;
GOODFELLOW, P ;
LOVELLBADGE, R .
CELL, 1993, 73 (05) :1019-1030
[3]   Regulation of circRNA biogenesis [J].
Chen, Ling-Ling ;
Yang, Li .
RNA BIOLOGY, 2015, 12 (04) :381-388
[4]   Lymphocyte-activation gene 3+ (LAG3+) forkhead box protein 3- (FOXP3-) regulatory T cells induced by B cells alleviates joint inflammation in collagen-induced arthritis [J].
Chen, Szu-Ying ;
Hsu, Wan-Tseng ;
Chen, Yi-Lien ;
Chien, Chien-Hui ;
Chiang, Bor-Luen .
JOURNAL OF AUTOIMMUNITY, 2016, 68 :75-85
[5]   hsa_circRNA_103636: potential novel diagnostic and therapeutic biomarker in Major depressive disorder [J].
Cui, Xuelian ;
Niu, Wei ;
Kong, Lingming ;
He, Mingjun ;
Jiang, Kunhong ;
Chen, Shengdong ;
Zhong, Aifang ;
Li, Wanshuai ;
Lu, Jim ;
Zhang, Liyi .
BIOMARKERS IN MEDICINE, 2016, 10 (09) :943-952
[6]   Natural RNA circles function as efficient microRNA sponges [J].
Hansen, Thomas B. ;
Jensen, Trine I. ;
Clausen, Bettina H. ;
Bramsen, Jesper B. ;
Finsen, Bente ;
Damgaard, Christian K. ;
Kjems, Jorgen .
NATURE, 2013, 495 (7441) :384-388
[7]   Detecting and characterizing circular RNAs [J].
Jeck, William R. ;
Sharpless, Norman E. .
NATURE BIOTECHNOLOGY, 2014, 32 (05) :453-461
[8]   Circular RNAs are abundant, conserved, and associated with ALU repeats [J].
Jeck, William R. ;
Sorrentino, Jessica A. ;
Wang, Kai ;
Slevin, Michael K. ;
Burd, Christin E. ;
Liu, Jinze ;
Marzluff, William F. ;
Sharpless, Norman E. .
RNA, 2013, 19 (02) :141-157
[9]   Circular RNA Expression Profile of Pancreatic Ductal Adenocarcinoma Revealed by Microarray [J].
Li, Haimin ;
Hao, Xiaokun ;
Wang, Huimin ;
Liu, Zhengcai ;
He, Yong ;
Pu, Meng ;
Zhang, Hongtao ;
Yu, Hengchao ;
Duan, Juanli ;
Qu, Shibin .
CELLULAR PHYSIOLOGY AND BIOCHEMISTRY, 2016, 40 (06) :1334-1344
[10]   Using circular RNA as a novel type of biomarker in the screening of gastric cancer [J].
Li, Peifei ;
Chen, Shengcan ;
Chen, Huilin ;
Mo, Xiaoyan ;
Li, Tianwen ;
Shao, Yongfu ;
Xiao, Bingxiu ;
Guo, Junming .
CLINICA CHIMICA ACTA, 2015, 444 :132-136