Ribosomal protein L7Ae is a subunit of archaeal RNase P

被引:57
作者
Cho, I-Ming [1 ,2 ,3 ]
Lai, Lien B. [1 ,3 ]
Susanti, Dwi [4 ,6 ]
Mukhopadhyay, Biswarup [4 ,5 ,6 ]
Gopalan, Venkat [1 ,2 ,3 ]
机构
[1] Ohio State Univ, Dept Biochem, Columbus, OH 43210 USA
[2] Ohio State Univ, Dept Mol Genet, Columbus, OH 43210 USA
[3] Ohio State Univ, Ctr RNA Biol, Columbus, OH 43210 USA
[4] Virginia Polytech Inst & State Univ, Virginia Bioinformat Inst, Blacksburg, VA 24061 USA
[5] Virginia Polytech Inst & State Univ, Dept Biochem & Biol Sci, Blacksburg, VA 24061 USA
[6] Virginia Polytech Inst & State Univ, Dept Genet, Bioinformat & Computat Biol Grad Program, Blacksburg, VA 24061 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
pre-tRNA processing; RPP38; protein-aided RNA catalysis; PYROCOCCUS-HORIKOSHII OT3; RIBONUCLEASE-P; BOX C/D; CRYSTAL-STRUCTURE; METHANOCOCCUS-MARIPALUDIS; RIBONUCLEOPROTEIN COMPLEX; SOLUBLE-RNA; INDUCED-FIT; C5; PROTEIN; BINDING;
D O I
10.1073/pnas.1005556107
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To the mounting evidence of nonribosomal functions for ribosomal proteins, we now add L7Ae as a subunit of archaeal RNase P, a ribonucleoprotein (RNP) that catalyzes 5'-maturation of precursor tRNAs (pre-tRNAs). We first demonstrate that L7Ae coelutes with partially purified Methanococcus maripaludis (Mma) RNase P activity. After establishing in vitro reconstitution of the single RNA with four previously known protein subunits (POP5, RPP21, RPP29, and RPP30), we show that addition of L7Ae to this RNase P complex increases the optimal reaction temperature and k(cat)/K(m) (by similar to 360-fold) for pre-tRNA cleavage to those observed with partially purified native Mma RNase P. We identify in the Mma RNase P RNA a putative kink-turn (K-turn), the structural motif recognized by L7Ae. The large stimulatory effect of Mma L7Ae on RNase P activity decreases to <= 4% of wild type upon mutating either the conserved nucleotides in this K-turn or amino acids in L7Ae shown to be essential for K-turn binding. The critical, multifunctional role of archaeal L7Ae in RNPs acting in tRNA processing (RNase P), RNA modification (H/ACA, C/D snoRNPs), and translation (ribosomes), especially by employing the same RNA-recognition surface, suggests coevolution of various translation-related functions, presumably to facilitate their coordinate regulation.
引用
收藏
页码:14573 / 14578
页数:6
相关论文
共 46 条
[1]   Characterization of RNase P holoenzymes from Methanococcus jannaschii and Methanothermobacter thermoautotrophicus [J].
Andrews, AJ ;
Hall, TA ;
Brown, JW .
BIOLOGICAL CHEMISTRY, 2001, 382 (08) :1171-1177
[2]   The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism [J].
Aravind, L ;
Iyer, LM ;
Anantharaman, V .
GENOME BIOLOGY, 2003, 4 (10)
[3]   Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P [J].
Boomershine, WP ;
McElroy, CA ;
Tsai, HY ;
Wilson, RC ;
Gopalan, V ;
Foster, MP .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (26) :15398-15403
[4]   The Hsp90 chaperone controls the biogenesis of L7Ae RNPs through conserved machinery [J].
Boulon, Severine ;
Marmier-Gourrier, Nathalie ;
Pradet-Balade, Berengere ;
Wurth, Laurence ;
Verheggen, Celine ;
Jady, Beata E. ;
Rothe, Benjamin ;
Pescia, Christina ;
Robert, Marie-Cecile ;
Kiss, Tamas ;
Bardoni, Barbara ;
Krol, Alain ;
Branlant, Christiane ;
Allmang, Christine ;
Bertrand, Edouard ;
Charpentier, Bruno .
JOURNAL OF CELL BIOLOGY, 2008, 180 (03) :579-595
[5]   The Ribonuclease P Database [J].
Brown, JW .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :314-314
[6]   Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP [J].
Chamberlain, JR ;
Lee, Y ;
Lane, WS ;
Engelke, DR .
GENES & DEVELOPMENT, 1998, 12 (11) :1678-1690
[7]   Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation [J].
Charpentier, B ;
Muller, S ;
Branlant, C .
NUCLEIC ACIDS RESEARCH, 2005, 33 (10) :3133-3144
[8]   The archaeal sRNA binding protein L7Ae has a 3D structure very similar to that of its eukaryal counterpart while having a broader RNA-binding specificity [J].
Charron, C ;
Manival, X ;
Cléry, A ;
Charpentier, B ;
Marmier-Gourrier, N ;
Branlant, C ;
Aubry, A .
JOURNAL OF MOLECULAR BIOLOGY, 2004, 342 (03) :757-773
[9]  
Chen W.-Y., 2010, NUCL ACIDS IN PRESS
[10]   The protein component of Bacillus subtilis ribonuclease P increases catalytic efficiency by enhancing interactions with the 5′ leader sequence of pre-tRNAAsp [J].
Crary, SM ;
Niranjanakumari, S ;
Fierke, CA .
BIOCHEMISTRY, 1998, 37 (26) :9409-9416