Trees;
Median vertex;
2-Trees;
Shellability;
Reconstruction;
D O I:
10.1007/s00285-017-1117-6
中图分类号:
Q [生物科学];
学科分类号:
07 ;
0710 ;
09 ;
摘要:
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed from the distances between the leaves (when the edges are given any strictly positive lengths). Moreover, a linear number of these pairwise distance values suffices to determine both the tree and its edge lengths. A natural set of pairs of leaves is provided by any 'triplet cover' of the tree (based on the fact that each non-leaf vertex is the median vertex of three leaves). In this paper we describe a number of new results concerning triplet covers of minimum size. In particular, we characterize such covers in terms of an associated graph being a 2-tree. Also, we show that minimum triplet covers are 'shellable' and thereby provide a set of pairs for which the inter-leaf distance values will uniquely determine the underlying tree and its associated branch lengths.
机构:
Chinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, Shanghai, Peoples R ChinaChinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, Shanghai, Peoples R China
Grunewald, Stefan
Huber, Katharina T.
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机构:
Univ East Anglia, Sch Comp Sci, Norwich, Norfolk, EnglandChinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, Shanghai, Peoples R China
Huber, Katharina T.
Moulton, Vincent
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机构:
Univ East Anglia, Sch Comp Sci, Norwich, Norfolk, EnglandChinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, Shanghai, Peoples R China
Moulton, Vincent
Steel, Mike
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机构:
Univ Canterbury, Biomath Res Ctr, Christchurch, New ZealandChinese Acad Sci, CAS MPG Partner Inst Computat Biol, Key Lab Computat Biol, Shanghai, Peoples R China
机构:
Department of Computational Biology and Applied Algorithmics, Max-Planck Institut für Informatik, SaarbrückenDepartment of Computational Biology and Applied Algorithmics, Max-Planck Institut für Informatik, Saarbrücken
Kalaghatgi P.
Lengauer T.
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机构:
Department of Computational Biology and Applied Algorithmics, Max-Planck Institut für Informatik, SaarbrückenDepartment of Computational Biology and Applied Algorithmics, Max-Planck Institut für Informatik, Saarbrücken