Massilia solisilvae sp nov., Massilia terrae sp nov and Massilia agilis sp nov., isolated from forest soil in South Korea by using a newly developed culture method

被引:17
作者
Altankhuu, Khulan [1 ]
Kim, Jaisoo [1 ]
机构
[1] Kyonggi Univ, Dept Life Sci, Coll Nat Sci, Suwon 16227, Gyeonggi Do, South Korea
关键词
new culture method; Massilia; forest soil; Proteobacteria; taxonomy; DEOXYRIBONUCLEIC-ACID; NAXIBACTER; SEQUENCES; DNA;
D O I
10.1099/ijsem.0.002076
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Using a newly developed culture method for not yet cultured soil bacteria, three Gram-stain-negative, aerobic, non-sporeforming, motile, and rod-shaped bacteria (strain designated J18(T), J11(T) and J9(T)) were isolated from forest soil at Kyonggi University, South Korea. Isolates were subjected to a taxonomic study by using a polyphasic approach. According to a phylogenetic tree based on 16S rRNA gene sequences, strains J18(T), J11(T) and J9(T) belonged to the genus Massilia and clustered with Massilia haematophila CCUG 38318(T) (similarity range: 97.6 +/- 98.0 %). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol, and the genomic DNA G+ C contents of strains J18(T), J11(T) and J9(T) were 63.4, 68.7 and 64.5 mol%, respectively. The major polyamines were putrescine and 2hydroxyputescine, which were detected in all three strains. DNA-DNA between the three tested strains and the reference strains much lower than 70 %, the recommended threshold value for the delineation of genomic species. The predominant respiratory quinine was ubiquinone-8 (Q-8) and the major cellular fatty acids were Summed feature 3 (C-16 : 1 omega 6c/C-16 : 1 omega 7c) and C-16 : 0. On the basis of phenotypic and genotypic data and DNA-DNA hybridization results, the three isolates are considered to represent three novel species of the genus Massilia, for which the names Massilia solisilvae sp. nov. for type strain J18(T) (= KEMB 9005-366(T) = JCM 31607(T)), Massilia terrae sp. nov. for type strain J11(T) (= KEMB 9005-360(T) = JCM 31606 T) and Massilia agilis sp. nov. for type strain J9(T) (= KEMB 9005-359(T) = JCM 31605(T)) are proposed.
引用
收藏
页码:3026 / 3032
页数:7
相关论文
共 26 条
[1]   Massilia pinisoli sp nov., isolated from forest soil [J].
Altankhuu, Khulan ;
Kim, Jaisoo .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :3669-3674
[2]  
BUSSE J, 1988, SYST APPL MICROBIOL, V11, P1
[3]   Massilia tieshanensis sp nov., isolated from mining soil [J].
Du, Yan ;
Yu, Xiang ;
Wang, Gejiao .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :2356-2362
[4]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[5]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[6]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[7]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[8]  
Hall T.A., 1999, IOC world bird list (version 11.1), DOI [10.1021/bk-1999-0734.ch008, DOI 10.14344/IOC.ML.11.1, DOI 10.1021/BK-1999-0734.CH008]
[9]  
Hiraishi A, 1998, APPL ENVIRON MICROB, V64, P992
[10]   Revision of the genus Massilia La Scola et al. 2000, with an emended description of the genus and inclusion of all species of the genus Naxibacter as new combinations, and proposal of Massilia consociata sp nov. [J].
Kaempfer, Peter ;
Lodders, Nicole ;
Martin, Karin ;
Falsen, Enevold .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 :1528-1533