COMPLEX RELATIONSHIPS BETWEEN MITOCHONDRIAL AND NUCLEAR DNA PRESERVATION IN HISTORICAL DNA EXTRACTS

被引：3
作者：
Campana, M. G. [1 ,2 ]
Lister, D. L. [2 ]
Whitten, C. M. [2 ,3 ]
Edwards, C. J. [4 ,5 ]
Stock, F. [5 ]
Barker, G. [1 ,2 ]
Bower, M. A. [1 ]
机构：
[1] Univ Cambridge, Dept Archaeol, Cambridge CB2 3DZ, England
[2] Univ Cambridge, McDonald Inst Archaeol Res, Cambridge, England
[3] Univ London Royal Vet Coll, Dept Vet Basic Sci, London, England
[4] Univ Oxford, Archaeol & Hist Art Res Lab, Oxford OX1 3QJ, England
[5] Trinity Coll Dublin, Smurfit Inst Genet, Dublin, Ireland
来源：
ARCHAEOMETRY | 2012年 / 54卷
关键词：
HISTORIC DNA; MITOCHONDRIAL DNA; NUCLEAR DNA; GENOME SEQUENCE; COAT COLOR; ANCIENT; BONES; GENE; PCR;
D O I：
10.1111/j.1475-4754.2011.00606.x
中图分类号：
K85 [文物考古];
学科分类号：
0601 ;
摘要：
Historical DNA obtained from specimens preserved in natural history collections has proven useful for addressing a wide variety of questions, such as the spread of domesticated species or changes in genetic diversity. With the development of high-throughput sequencing techniques, there is an increasing focus on acquiring genetic information encoded by single-copy nuclear DNA from historical DNA extracts. The development of efficient techniques to determine the level of nuclear DNA preservation in candidate specimens is necessary to maximize the data obtained from these analyses. Although current evidence suggests that a sample's mitochondrial DNA preservation predicts its nuclear DNA preservation, we show that the relationships between mitochondrial and nuclear DNA preservation are complex.
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页码：193 / 202
页数：10
相关论文
共 22 条
  • [1] Assessing the fidelity of ancient DNA sequences amplified from nuclear genes
    Binladen, J
    Wiuf, C
    Gilbert, MTP
    Bunce, M
    Barnett, R
    Larson, G
    Greenwood, AD
    Haile, J
    Ho, SYW
    Hansen, AJ
    Willerslev, E
    [J]. GENETICS, 2006, 172 (02) : 733 - 741
  • [2] BOWER MA, MULTIDISCIPLIN UNPUB
  • [3] Accurate Determination of Phenotypic Information from Historic Thoroughbred Horses by Single Base Extension
    Campana, Michael G.
    Whitten, C. Mark
    Edwards, Ceiridwen J.
    Stock, Frauke
    Murphy, Angela M.
    Binns, Matthew M.
    Barker, Graeme W. W.
    Bower, Mim A.
    [J]. PLOS ONE, 2010, 5 (12):
  • [4] Coogle L, 1996, ANIM GENET, V27, P289, DOI 10.1111/j.1365-2052.1996.tb00500.x
  • [5] Quantification of damage in DNA recovered from highly degraded samples - A case study on DNA in faeces
    Deagle B.E.
    Eveson J.P.
    Jarman S.N.
    [J]. Frontiers in Zoology, 3 (1)
  • [6] A Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius)
    Edwards, Ceiridwen J.
    Magee, David A.
    Park, Stephen D. E.
    McGettigan, Paul A.
    Lohan, Amanda J.
    Murphy, Alison
    Finlay, Emma K.
    Shapiro, Beth
    Chamberlain, Andrew T.
    Richards, Martin B.
    Bradley, Daniel G.
    Loftus, Brendan J.
    MacHugh, David E.
    [J]. PLOS ONE, 2010, 5 (02):
  • [7] Bone preservation and DNA amplification
    Götherström, A
    Collins, MJ
    Angerbjörn, A
    Lidén, K
    [J]. ARCHAEOMETRY, 2002, 44 : 395 - 404
  • [8] A Draft Sequence of the Neandertal Genome
    Green, Richard E.
    Krause, Johannes
    Briggs, Adrian W.
    Maricic, Tomislav
    Stenzel, Udo
    Kircher, Martin
    Patterson, Nick
    Li, Heng
    Zhai, Weiwei
    Fritz, Markus Hsi-Yang
    Hansen, Nancy F.
    Durand, Eric Y.
    Malaspinas, Anna-Sapfo
    Jensen, Jeffrey D.
    Marques-Bonet, Tomas
    Alkan, Can
    Pruefer, Kay
    Meyer, Matthias
    Burbano, Hernan A.
    Good, Jeffrey M.
    Schultz, Rigo
    Aximu-Petri, Ayinuer
    Butthof, Anne
    Hoeber, Barbara
    Hoeffner, Barbara
    Siegemund, Madlen
    Weihmann, Antje
    Nusbaum, Chad
    Lander, Eric S.
    Russ, Carsten
    Novod, Nathaniel
    Affourtit, Jason
    Egholm, Michael
    Verna, Christine
    Rudan, Pavao
    Brajkovic, Dejana
    Kucan, Zeljko
    Gusic, Ivan
    Doronichev, Vladimir B.
    Golovanova, Liubov V.
    Lalueza-Fox, Carles
    de la Rasilla, Marco
    Fortea, Javier
    Rosas, Antonio
    Schmitz, Ralf W.
    Johnson, Philip L. F.
    Eichler, Evan E.
    Falush, Daniel
    Birney, Ewan
    Mullikin, James C.
    [J]. SCIENCE, 2010, 328 (5979) : 710 - 722
  • [9] A simple and efficient method for PCR amplifiable DNA extraction from ancient bones
    Kalmar, Tibor
    Bachrati, Csanad Z.
    Marcsik, Antonia
    Rasko, Istvan
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (12) : 67
  • [10] Extraction and amplification of nuclear DNA from herbarium specimens of emmer wheat: a method for assessing DNA preservation by maximum amplicon length recovery
    Lister, Diane L.
    Bower, Mim A.
    Howe, Christopher J.
    Jones, Martin K.
    [J]. TAXON, 2008, 57 (01) : 254 - 258
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