The genome editing revolution: A CRISPR-Cas TALE off-target story

被引:35
作者
Stella, Stefano [1 ]
Montoya, Guillermo [1 ]
机构
[1] Univ Copenhagen, Fac Hlth & Med Sci, Novo Nordisk Fdn Ctr Prot Res, Prot Struct & Funct Programme, Copenhagen, Denmark
关键词
CRISPR-Cas9; engineered nucleases; genome editing; specificity; TALE; STRAND BREAK REPAIR; DNA RECOGNITION; GENE CORRECTION; HIGH SPECIFICITY; STRUCTURAL BASIS; MOLECULAR-BASIS; WIDE ANALYSIS; RNA; NUCLEASES; CLEAVAGE;
D O I
10.1002/bies.201670903
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In the last 10 years, we have witnessed a blooming of targeted genome editing systems and applications. The area was revolutionized by the discovery and characterization of the transcription activator-like effector proteins, which are easier to engineer to target new DNA sequences than the previously available DNA binding templates, zinc fingers and meganucleases. Recently, the area experimented a quantum leap because of the introduction of the clustered regularly interspaced short palindromic repeats (CRISPR)-associated protein (Cas) system (clustered regularly interspaced short palindromic sequence). This ribonucleoprotein complex protects bacteria from invading DNAs, and it was adapted to be used in genome editing. The CRISPR ribonucleic acid (RNA) molecule guides to the specific DNA site the Cas9 nuclease to cleave the DNA target. Two years and more than 1000 publications later, the CRISPR-Cas system has become the main tool for genome editing in many laboratories. Currently the targeted genome editing technology has been used in many fields and may be a possible approach for human gene therapy. Furthermore, it can also be used to modifying the genomes of model organisms for studying human pathways or to improve key organisms for biotechnological applications, such as plants, livestock genome as well as yeasts and bacterial strains.
引用
收藏
页码:S4 / S13
页数:10
相关论文
共 92 条
[1]   Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease [J].
Anders, Carolin ;
Niewoehner, Ole ;
Duerst, Alessia ;
Jinek, Martin .
NATURE, 2014, 513 (7519) :569-+
[2]   Engineered I-Crel derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells [J].
Arnould, Sylvain ;
Perez, Christophe ;
Cabaniols, Jean-Pierre ;
Smith, Julianne ;
Gouble, Agnes ;
Grizot, Sylvestre ;
Epinat, Jean-Charles ;
Duclert, Aymeric ;
Duchateau, Philippe ;
Paques, Frederic .
JOURNAL OF MOLECULAR BIOLOGY, 2007, 371 (01) :49-65
[3]   A prudent path forward for genomic engineering and germline gene modification [J].
Baltimore, David ;
Berg, Paul ;
Botchan, Michael ;
Carroll, Dana ;
Charo, R. Alta ;
Church, George ;
Corn, Jacob E. ;
Daley, George Q. ;
Doudna, Jennifer A. ;
Fenner, Marsha ;
Greely, Henry T. ;
Jinek, Martin ;
Martin, G. Steven ;
Penhoet, Edward ;
Puck, Jennifer ;
Sternberg, Samuel H. ;
Weissman, Jonathan S. ;
Yamamoto, Keith R. .
SCIENCE, 2015, 348 (6230) :36-38
[4]   Is Non-Homologous End-Joining Really an Inherently Error-Prone Process? [J].
Betermier, Mireille ;
Bertrand, Pascale ;
Lopez, Bernard S. .
PLOS GENETICS, 2014, 10 (01)
[5]   Compact designer TALENs for efficient genome engineering [J].
Beurdeley, Marine ;
Bietz, Fabian ;
Li, Jin ;
Thomas, Severine ;
Stoddard, Thomas ;
Juillerat, Alexandre ;
Zhang, Feng ;
Voytas, Daniel F. ;
Duchateau, Philippe ;
Silva, George H. .
NATURE COMMUNICATIONS, 2013, 4
[6]   Enhancing gene targeting with designed zinc finger nucleases [J].
Bibikova, M ;
Beumer, K ;
Trautman, JK ;
Carroll, D .
SCIENCE, 2003, 300 (5620) :764-764
[7]   Xanthomonas AvrBs3 Family-Type III Effectors: Discovery and Function [J].
Boch, Jens ;
Bonas, Ulla .
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 48, 2010, 48 :419-436
[8]   Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors [J].
Boch, Jens ;
Scholze, Heidi ;
Schornack, Sebastian ;
Landgraf, Angelika ;
Hahn, Simone ;
Kay, Sabine ;
Lahaye, Thomas ;
Nickstadt, Anja ;
Bonas, Ulla .
SCIENCE, 2009, 326 (5959) :1509-1512
[9]   Saccharomyces cerevisiae Ku70 potentiates illegitimate DNA double-strand break repair and serves as a barrier to error-prone DNA repair pathways [J].
Boulton, SJ ;
Jackson, SP .
EMBO JOURNAL, 1996, 15 (18) :5093-5103
[10]   Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers [J].
Briggs, Adrian W. ;
Rios, Xavier ;
Chari, Raj ;
Yang, Luhan ;
Zhang, Feng ;
Mali, Prashant ;
Church, George M. .
NUCLEIC ACIDS RESEARCH, 2012, 40 (15) :e117