Simple and Robust Deep Learning Approach for Fast Fluorescence Lifetime Imaging

被引:4
作者
Wang, Quan [1 ]
Li, Yahui [2 ]
Xiao, Dong [1 ]
Zang, Zhenya [1 ]
Jiao, Zi'ao [1 ]
Chen, Yu [3 ]
Li, David Day Uei [1 ]
机构
[1] Univ Strathclyde, Dept Biomed Engn, Glasgow G4 0RU, Lanark, Scotland
[2] Xian Inst Opt & Precis Mech, Key Lab Ultrafast Photoelect Diagnost Technol, Xian 710049, Peoples R China
[3] Univ Strathclyde, Dept Phys, Glasgow G4 0NG, Lanark, Scotland
基金
英国生物技术与生命科学研究理事会;
关键词
fluorescence lifetime imaging (FLIM); deep learning; imaging analysis; CALCIUM; REPRESENTATION; DECAY;
D O I
10.3390/s22197293
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Fluorescence lifetime imaging (FLIM) is a powerful tool that provides unique quantitative information for biomedical research. In this study, we propose a multi-layer-perceptron-based mixer (MLP-Mixer) deep learning (DL) algorithm named FLIM-MLP-Mixer for fast and robust FLIM analysis. The FLIM-MLP-Mixer has a simple network architecture yet a powerful learning ability from data. Compared with the traditional fitting and previously reported DL methods, the FLIM-MLP-Mixer shows superior performance in terms of accuracy and calculation speed, which has been validated using both synthetic and experimental data. All results indicate that our proposed method is well suited for accurately estimating lifetime parameters from measured fluorescence histograms, and it has great potential in various real-time FLIM applications.
引用
收藏
页数:10
相关论文
共 39 条
  • [1] Fast fluorescence lifetime imaging of calcium in living cells
    Agronskaia, AV
    Tertoolen, L
    Gerritsen, HC
    [J]. JOURNAL OF BIOMEDICAL OPTICS, 2004, 9 (06) : 1230 - 1237
  • [2] [Anonymous], PYTORCH
  • [3] A Guide to Fluorescent Protein FRET Pairs
    Bajar, Bryce T.
    Wang, Emily S.
    Zhang, Shu
    Lin, Michael Z.
    Chu, Jun
    [J]. SENSORS, 2016, 16 (09):
  • [4] MAXIMUM-LIKELIHOOD METHOD FOR THE ANALYSIS OF TIME-RESOLVED FLUORESCENCE DECAY CURVES
    BAJZER, Z
    THERNEAU, TM
    SHARP, JC
    PRENDERGAST, FG
    [J]. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1991, 20 (05): : 247 - 262
  • [5] Becker W., 2005, ADV TIME CORRELATED
  • [6] Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction
    Belthangady, Chinmay
    Royer, Loic A.
    [J]. NATURE METHODS, 2019, 16 (12) : 1215 - 1225
  • [7] Fluorescence Lifetime Measurements and Biological Imaging
    Berezin, Mikhail Y.
    Achilefu, Samuel
    [J]. CHEMICAL REVIEWS, 2010, 110 (05) : 2641 - 2684
  • [8] Generative adversarial network enables rapid and robust fluorescence lifetime image analysis in live cells
    Chen, Yuan-, I
    Chang, Yin-Jui
    Liao, Shih-Chu
    Trung Duc Nguyen
    Yang, Jianchen
    Kuo, Yu-An
    Hong, Soonwoo
    Liu, Yen-Liang
    Rylander, H. Grady
    Santacruz, Samantha R.
    Yankeelov, Thomas E.
    Yeh, Hsin-Chih
    [J]. COMMUNICATIONS BIOLOGY, 2022, 5 (01)
  • [9] Graphical representation and multicomponent analysis of single-frequency fluorescence lifetime imaging microscopy data
    Clayton, AHA
    Hanley, QS
    Verveer, PJ
    [J]. JOURNAL OF MICROSCOPY-OXFORD, 2004, 213 (01): : 1 - 5
  • [10] Calibration of a wide-field frequency-domain fluorescence lifetime microscopy system using light emitting diodes as light sources
    Elder, A. D.
    Frank, J. H.
    Swartling, J.
    Dai, X.
    Kaminski, C. F.
    [J]. JOURNAL OF MICROSCOPY, 2006, 224 : 166 - 180