Genome-wide analysis of TCP family in tobacco

被引：40
作者：
Chen, L. [1 ,2 ]
Chen, Y. Q. [3 ]
Ding, A. M. [1 ]
Chen, H. [1 ,2 ]
Xia, F. [1 ,2 ]
Wang, W. F. [1 ,2 ]
Sun, Y. H. [1 ]
机构：
[1] Chinese Acad Agr Sci, Tobacco Res Inst, Key Lab Tobacco Gene Resources, Qingdao, Peoples R China
[2] Chinese Acad Agr Sci, Grad Sch, Beijing, Peoples R China
[3] China Natl Tobacco Co, Kunming Tobacco Corp, Kunming, Peoples R China
来源：
GENETICS AND MOLECULAR RESEARCH | 2016年 / 15卷 / 02期
基金：
国家高技术研究发展计划(863计划);
关键词：
Tobacco; TCP transcription factor; Phylogenetic analysis; Gene expression pattern analysis; TRANSCRIPTION FACTORS; CLASS-I; EXPRESSION; DATABASE; IDENTIFICATION; CYTOKININ; GROWTH; GENES; ACTS; DNA;
D O I：
10.4238/gmr.15027728
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
The TCP family is a transcription factor family, members of which are extensively involved in plant growth and development as well as in signal transduction in the response against many physiological and biochemical stimuli. In the present study, 61 TCP genes were identified in tobacco (Nicotiana tabacum) genome. Bioinformatic methods were employed for predicting and analyzing the gene structure, gene expression, phylogenetic analysis, and conserved domains of TCP proteins in tobacco. The 61 NtTCP genes were divided into three diverse groups, based on the division of TCP genes in tomato and Arabidopsis, and the results of the conserved domain and sequence analyses further confirmed the classification of the NtTCP genes. The expression pattern of NtTCP also demonstrated that majority of these genes play important roles in all the tissues, while some special genes exercise their functions only in specific tissues. In brief, the comprehensive and thorough study of the TCP family in other plants provides sufficient resources for studying the structure and functions of TCPs in tobacco.
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页数：14
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